Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e11
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   1.4  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   4.3  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   4.3  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 386  VTYVSLELFLFFLLMWSFIVFFLPKYFFPFIILSQQVMGIKHNISECNKC 237
            +T+V + L LFF  +    ++ LP +F   +I  Q +  +  N  + N C
Sbjct: 1519 ITFVDMTL-LFFRNVSDANLYSLPMFFGELLITQQSIFAVTANNMKINAC 1567


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 199 LEYIKCINLWLYIHLLHSEILCLIP 273
           L  ++  + W++I++LH+ +L L P
Sbjct: 106 LVLVRMTDYWIFINILHNALLVLFP 130


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 323 FLPKYFFPFIILSQQVMGIKHNISECNKCMYNQRFIHLIYSR 198
           F   +F  F+ +  +     HNI E +KC + Q F H    R
Sbjct: 252 FQDNFFRDFLKVCDEC-NFNHNIKEFSKCDFTQMFHHFEQKR 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,459
Number of Sequences: 5004
Number of extensions: 40511
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)