Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e11
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical ...    28   5.3  
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z83237-2|CAB05789.1|  258|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical
           protein K04D7.4 protein.
          Length = 1159

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = -1

Query: 380 YVSLELFLFFLLMWSFIVFFLPKYFFPFIILSQQVMGIKHNISECNKCMYNQRFIHLIY 204
           Y+S+ + +F +++++FI F +  +       ++  M  KH + +  KC+Y +    L+Y
Sbjct: 564 YISVLIVIFAIIIFAFICFVIVHF-------ARGSMNFKHLLKKKEKCVYLEEISPLVY 615


>Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -1

Query: 359 LFFLLMWSFIVFFLPKYFFPFI--ILSQQVMGIKHNISECN---KCMYNQRFIHLIY 204
           L  LL W F +FF  +  FP     + Q   G     S+C+    C  N  F+++ +
Sbjct: 10  LLVLLTWQFSIFFASQQIFPIFSNYVPQWTCGNGEPTSDCSVYESCKSNLTFVNVAF 66


>AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -1

Query: 359 LFFLLMWSFIVFFLPKYFFPFI--ILSQQVMGIKHNISECN---KCMYNQRFIHLIY 204
           L  LL W F +FF  +  FP     + Q   G     S+C+    C  N  F+++ +
Sbjct: 10  LLVLLTWQFSIFFASQQIFPIFSNYVPQWTCGNGEPTSDCSVYESCKSNLTFVNVAF 66


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 12  PYE*LLPFTSRIEVFILWYYEPMTYLVH 95
           PYE +LP T   E+F  W + PM   +H
Sbjct: 873 PYEDMLPPTEYHEIFNEWCFTPMLASLH 900


>Z83237-2|CAB05789.1|  258|Caenorhabditis elegans Hypothetical
           protein R06B9.2 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -2

Query: 376 YHWNFFFSFY*CGLLLSSFYQS---ISFPSLF*VNKSWVLNIISQSATSVCITKDLYT 212
           Y W F+F    C +L  SF  +   I +     V++SW  NI+ +S+  +    DL T
Sbjct: 102 YEWQFWFQLP-CSVLPPSFEGNNGNIRYWVRAEVSRSWKFNIVDESSFEIAPFLDLNT 158


>Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical
           protein R07B7.13 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 308 FFPFIILSQQVMGIKHNISECNKCMYNQRFIHLIYSRVLTMTMNQMIGR 162
           FFP I     +  +KH +  C    +++R I    S +L  T   + G+
Sbjct: 232 FFPKISKETAIKLVKHGLFMCGSLSFSRRSIQKYNSDILRFTDGSVAGK 280


>AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical
           protein H22D07.1 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 393 FICNIC-IIGTFSFLFTNVVFYCLLFTKVFLSLHYFKSTSH 274
           F+C  C    TFSF   + V  C+   +VF + +     +H
Sbjct: 106 FLCRACAFFSTFSFYLNSFVIACIAIDRVFGAYNISSLNAH 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,096
Number of Sequences: 27780
Number of extensions: 214911
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)