Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18e03
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 103 1e-22
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 99 2e-21
12_01_0722 + 6355972-6359031 34 0.088
12_01_0740 + 6646471-6649407 33 0.20
12_02_0589 + 20850249-20850491,20850583-20851839 32 0.35
12_01_0741 + 6649988-6653065 32 0.35
12_01_0727 + 6446283-6449300 31 0.82
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 31 0.82
12_01_0731 - 6516894-6517473,6517485-6519574 30 1.1
12_01_0715 - 6230393-6231559,6233234-6234553 30 1.1
12_01_0736 + 6582371-6585370 30 1.4
12_01_0718 + 6339982-6342981 30 1.4
01_01_0421 + 3181139-3184207 30 1.4
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 29 2.5
12_01_0708 - 6137865-6140909 28 4.4
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 28 4.4
12_01_0714 + 6223269-6226250 28 5.8
12_01_0686 - 5855216-5858263 28 5.8
05_06_0204 + 26354319-26356967 27 7.6
01_01_0423 + 3198075-3199010 27 7.6
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 103 bits (246), Expect = 1e-22
Identities = 54/147 (36%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
Frame = +1
Query: 115 EYYNVNNTKINMLQLFQQDRERFEKFSLCIPTPNDGD-ILLDYSKNRINSDVFKLLLDLA 291
E +V + L+ D ER + + C+ ++ + I LDYS+ R + + L LA
Sbjct: 31 EQAHVGEIQKTHLRHLMHDVERCKAMTACLLIDSEYEGIYLDYSRQRATGETMEKLFKLA 90
Query: 292 KSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEF 471
++ +++ + MF G KIN TE+R+VLH+ALR +++ I NG +V +V V + +K+F
Sbjct: 91 EAAKLKEKIEKMFRGDKINSTENRSVLHVALRAPRDEVINSNGVNVVPEVWGVKDKIKQF 150
Query: 472 SDQVVSGQWKGYTGKAITDVINIGIGG 552
S+ SG W G TGKA+T+V+++GIGG
Sbjct: 151 SETFRSGSWVGATGKALTNVVSVGIGG 177
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 99.1 bits (236), Expect = 2e-21
Identities = 47/109 (43%), Positives = 74/109 (67%)
Frame = +1
Query: 226 ILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKP 405
I LDYS+ R + + L LA++ +++ + MFSG KIN TE+R+VLH+ALR +++
Sbjct: 63 IFLDYSRQRATGETMEKLFKLAEAAKLKEKIEKMFSGDKINSTENRSVLHVALRAPRDEV 122
Query: 406 ILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVINIGIGG 552
I +G +V +V V + +K+FS+ SG W G TGKA+T+V+++GIGG
Sbjct: 123 IKSDGVNVVPEVWGVKDKIKQFSETFRSGSWVGATGKALTNVVSVGIGG 171
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 33.9 bits (74), Expect = 0.088
Identities = 22/52 (42%), Positives = 24/52 (46%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFSG 336
F F IP P G I LDYS NR +S L KS V +A D SG
Sbjct: 594 FNNFDGAIPVPQKGSITLDYSTNRFSSMPLNFSSYL-KSTVVLKASDNSLSG 644
>12_01_0740 + 6646471-6649407
Length = 978
Score = 32.7 bits (71), Expect = 0.20
Identities = 21/52 (40%), Positives = 24/52 (46%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFSG 336
F F IP P G I LDYS NR +S L K+ V +A D SG
Sbjct: 553 FNNFDGAIPVPQKGSITLDYSTNRFSSMPLNFSSYL-KNTVVLKASDNSLSG 603
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 52 SIVTMEPKINLKQDAAYQKLQEYYNVNNTKINMLQLFQQDRERFEKFS 195
++V ME + + K+ AAY L Y + + N+ +++++ RE F KFS
Sbjct: 255 ALVEMEKRASRKERAAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFS 302
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F F IP P G + LDYS NR +S
Sbjct: 587 FNNFEGTIPIPEQGSVTLDYSNNRFSS 613
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 30.7 bits (66), Expect = 0.82
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F IP P +G + LDYS NR +S
Sbjct: 580 FNNIEGAIPIPKEGSVTLDYSNNRFSS 606
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.7 bits (66), Expect = 0.82
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Frame = +1
Query: 49 QSIVTMEPKINLKQDA---AYQKLQEYYNVNNTKINMLQLFQQDRERFEKFSLCIPTPND 219
+ + + E K++ K+ + +KL+E+ N +TK N L+ +++ + EK
Sbjct: 370 KDVRSSEEKLSKKEQVLNESKKKLEEWQNDLDTKSNALKKWEESLQNDEK--------QL 421
Query: 220 GDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRNRQN 399
+ L R ++++KL L+ K+ V + + + TE+ HI L +
Sbjct: 422 SEQKLQIENERKQAEMYKLELESLKATVVAEKEKILQEQNNLKLTEEERQEHIMLTAQLK 481
Query: 400 KPI 408
K I
Sbjct: 482 KEI 484
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F IP P +G + LDYS NR +S
Sbjct: 587 FNNIEGTIPIPKEGSVTLDYSNNRFSS 613
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F IP P +G + LDYS NR +S
Sbjct: 502 FNNIEGVIPIPKEGSVTLDYSNNRFSS 528
>12_01_0736 + 6582371-6585370
Length = 999
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F K IP P G I LDYS N+ +S
Sbjct: 575 FNKIEGVIPIPQKGSITLDYSNNQFSS 601
>12_01_0718 + 6339982-6342981
Length = 999
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F K IP P G I LDYS N+ +S
Sbjct: 575 FNKIEGVIPIPQKGSITLDYSNNQFSS 601
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F KF IP P + +LDYS NR +S
Sbjct: 598 FNKFEGPIPLPQNSGTVLDYSNNRFSS 624
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 260 VMFLSCSSISLRAEMLNKPEMPCSQV 337
V F SC+S+ AE+LN ++ CS +
Sbjct: 353 VFFSSCNSVKFHAELLNFLQIECSDI 378
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 202 IPTPNDGDILLDYSKNRINS 261
IP P +G +LDYS N+ +S
Sbjct: 600 IPVPQEGSTMLDYSSNQFSS 619
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F F IP P + +LDYS NR +S
Sbjct: 316 FNMFEGTIPLPQNSRFVLDYSNNRFSS 342
>12_01_0714 + 6223269-6226250
Length = 993
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 229 LLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFSGQKINFTEDRAVLHIALRN 390
+L SKN+ ++ K R + +++ SG NF++D ++ ++ L N
Sbjct: 272 VLQLSKNKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNN 325
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 202 IPTPNDGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAM 327
IP P +G LDYS N+ +S L L ++ + +R+ +
Sbjct: 599 IPIPQEGSSTLDYSSNQFSSIPLHYLTYLGETLTFKASRNKL 640
>05_06_0204 + 26354319-26356967
Length = 882
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 106 KLQEYYNVNNTKINMLQLFQQDRERFEKFSLCIPTPN 216
K EY + + L Q+D R +KF L + T N
Sbjct: 817 KSAEYQEIGGEPFKLFALLQEDSRRSDKFVLLVITDN 853
>01_01_0423 + 3198075-3199010
Length = 311
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 181 FEKFSLCIPTPNDGDILLDYSKNRINS 261
F F IP P D +LDYS N +S
Sbjct: 35 FNMFEGPIPLPRDSGTVLDYSNNHFSS 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,156
Number of Sequences: 37544
Number of extensions: 275299
Number of successful extensions: 677
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -