Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d23
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 180 9e-46
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 167 7e-42
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 155 4e-38
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 44 8e-05
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 43 2e-04
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 39 0.004
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 39 0.004
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 32 0.35
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 32 0.35
07_03_1414 - 26403361-26403969 28 7.6
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 7.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 180 bits (438), Expect = 9e-46
Identities = 88/156 (56%), Positives = 106/156 (67%)
Frame = +3
Query: 195 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFIQTLD 374
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQF +TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 375 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 554
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140
Query: 555 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 662
+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIV
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIV 176
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 167 bits (406), Expect = 7e-42
Identities = 82/151 (54%), Positives = 101/151 (66%)
Frame = +3
Query: 195 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFIQTLD 374
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQF +TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 375 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 554
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124
Query: 555 KKKAQLVVIAHDVDPIELVLFLPALCRKMGV 647
+ KAQLVVIAHDVDPIELV++LPALCRKM +
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 155 bits (375), Expect = 4e-38
Identities = 80/156 (51%), Positives = 102/156 (65%)
Frame = +3
Query: 195 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFIQTLD 374
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQF +TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 375 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 554
K ++L++ + E +P ++ G + VT L+E
Sbjct: 83 KNLGCQKERLLKRAQAEA-----------------EGKTVEAKKPIVVKYGLDHVTYLIE 125
Query: 555 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 662
+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIV
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 161
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 662
++ G N TK + + A+ VV+A D +P+E++L LP L VPY V
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFV 81
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 662
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFV 83
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 662
++ G V K + + + L +IA ++ PI+++ +P LC + +PY V
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYV 93
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 662
++ G V K + + L VIA ++ PI+++ +P LC + +PY V
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYV 93
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 525 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 647
G K +EK AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 525 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 647
G K +EK AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_03_1414 - 26403361-26403969
Length = 202
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 302 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 165
L A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 77 LSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 293 PHPASEGCTSASSESAPSDQP 355
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,784,274
Number of Sequences: 37544
Number of extensions: 280041
Number of successful extensions: 841
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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