Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d21
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    31   0.15 
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    30   0.26 
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    29   0.80 
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    28   1.4  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    28   1.4  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    27   2.4  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   7.4  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   9.8  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
 Frame = +1

Query: 277  EEENYKMYMDSLQK--HQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQMST 450
            E+ +Y+  +  L++  ++LES      + E+  +   SSL         QL     + S 
Sbjct: 661  EQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSL 720

Query: 451  LMLKTNHLSRSLNFNETIHPQRDEID-LHQNLRHEEALRNLDVTLFRNELELQNN-LSQA 624
             + K N L +SL  +E     +DE+D  +++L+ + A + ++V    ++L + N+ L Q+
Sbjct: 721  ALEKLNDLEKSLVLSER---SKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQS 777

Query: 625  --LVQNLSEQDL 654
              +V NL  ++L
Sbjct: 778  NHIVDNLKSENL 789


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 208 QLSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQL--HQAMQ 381
           QL S N  W L  D V+ EE+N+   ++++    L+    +  Y   +S+  +  H   +
Sbjct: 315 QLLSKNRNWVLMRDIVQLEEYNSYLLDHRIVSAFLKPLSEKGNYKDILSLISVWQHSVWR 374

Query: 382 SSLNNSGIVHNFQL 423
            SL    +V++F +
Sbjct: 375 PSLAYLQVVYSFSM 388


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = +1

Query: 244 MDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQI---SMEQLHQAMQSSLNNSGIVHN 414
           + F  ++  N  +EN+ ++  ++     +S     I   + E+  +   S+L   G++ +
Sbjct: 435 LKFYAKKVANVSDENFPIFATAITGRPYKSLKSLPIGGPNHEEEQKKFISALQKGGMLQS 494

Query: 415 FQLPLSPRQMSTLML-KTNHLSRSLNFN 495
               LS     TL+L KTN L RSL+ N
Sbjct: 495 IIRLLSTMPRLTLLLMKTNDLVRSLDEN 522


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -1

Query: 110 FRVESIKYYIVSINMFEKIKIKQVFFNHL 24
           F +ES++++ + IN  EKI +K +F+N L
Sbjct: 43  FFIESLQFHYL-INQSEKISLKLIFWNEL 70


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 262 EEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNS 399
           EE   ++E  K Y+    K ++E   H Q+ +EQ  +  + +L  S
Sbjct: 25  EEIVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKS 70


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +1

Query: 238 LKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNF 417
           L++  +K+   +A+++N +     L    L      + S EQL QA   +  +   + N 
Sbjct: 21  LRIHELKQHSRDADDQNPEQIKRQLMSKLLILREANRKSYEQLVQAKTITAEHKSELDNA 80

Query: 418 QLPLSPRQMSTLMLKT 465
           ++ L   Q   L LKT
Sbjct: 81  RIRLQALQYKKLHLKT 96


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 330 FQLMFLKTVHVHFVILFFGIMFFSFHKIH 244
           F   F   VH+H+++   G+  F+    H
Sbjct: 403 FMFAFCSKVHIHYIVSLIGLTIFNIADYH 431


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +1

Query: 424 PLSPRQMSTLMLKTNHLSRSLNFNE-TIHPQRDEIDLH-QNLR-HEEALRNLDVTLFRNE 594
           P SP+  S LM + + LSR  + +E ++ P  +    + + LR   + LR+L++   +NE
Sbjct: 295 PASPKSDSALMDEDSDLSRRHSLSEQSLSPVSESYPQYAKTLRLTSDQLRSLNLKPGKNE 354

Query: 595 LELQNNLSQAL 627
           L    N  +A+
Sbjct: 355 LSFGVNGGKAI 365


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
 Frame = +1

Query: 259 REEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVH----NFQLP 426
           ++ HN E   +K+  DS      E+ ++         QAM  S       +    N Q+P
Sbjct: 85  QDYHNLESSPFKLQCDSPYNVPPENMFNQNPDFANFFQAMLQSAKEGSDTNFQGENEQIP 144

Query: 427 LSPRQMSTLMLKTNHL 474
            +   +  L+ K  HL
Sbjct: 145 QATAPLKNLVEKYAHL 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,795
Number of Sequences: 5004
Number of extensions: 53475
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)