Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d21
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0674 + 18565426-18565487,18565591-18565696,18565856-185659... 31 0.62
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702... 31 0.82
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216... 30 1.9
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 29 3.3
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175... 29 4.4
02_03_0306 - 17540258-17540610,17544063-17544128,17544266-175443... 29 4.4
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 28 5.8
03_05_0308 - 22977542-22978174,22978202-22978387 28 5.8
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 28 5.8
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260... 28 7.7
>04_03_0674 +
18565426-18565487,18565591-18565696,18565856-18565922,
18566049-18566150,18566202-18566314,18566717-18566815,
18567251-18567318,18568264-18568477,18568929-18568984,
18569213-18569320,18569562-18569745,18569914-18570009
Length = 424
Score = 31.5 bits (68), Expect = 0.62
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Frame = +1
Query: 244 MDFVKREEHNAEEENYKMYMD--SLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNF 417
M+++ +E AEEEN K+ ++ S+ + L++ +Q S++ L S+ +
Sbjct: 82 MEWLSKEVSLAEEENRKLSVEISSVAETTLKA-CSSQFSLQHLTLCYLDSIQLDADIA-- 138
Query: 418 QLPLSPRQMSTLMLKTNHLSRSLNFNETIHPQRDEIDLHQNLRHEEALRNLDVTLFRNEL 597
+L S +++ + LK S + + RD+I ++ ++E N + + N+L
Sbjct: 139 ELESSLKKIDSQGLKHLEASHIAELSVSTDSCRDQIKFDKDYKYEVLELNQQLEKYENDL 198
Query: 598 ELQNNLSQA 624
+L N A
Sbjct: 199 KLLENQKSA 207
>07_03_1792 +
29569623-29569737,29569848-29569981,29570117-29570284,
29572817-29573003,29573098-29573422,29573591-29574368,
29574897-29575022
Length = 610
Score = 31.1 bits (67), Expect = 0.82
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +1
Query: 397 SGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFNETIHPQRDEIDLHQNLRHEEALRNLDV 576
S I N LP + + S +TN + + I R+ +Q+ +E +++ D
Sbjct: 178 SDICSNRWLPCTSNKNSKKQKETNDDFKGKDLE--IGSPRNLNTAYQSSPNERSIKPTDR 235
Query: 577 TLFRNELELQNNLSQALVQNLSEQDLR 657
RNE LQNN +A ++NL E +R
Sbjct: 236 ---RNEYPLQNNSKEAAMENLEESSVR 259
>01_07_0370 - 43119049-43120278,43121376-43121420,43121421-43121662,
43121908-43122686,43123123-43123463,43123565-43123785,
43123866-43124176,43124257-43124516,43124836-43124918,
43124940-43125036,43125132-43125305,43126215-43126592
Length = 1386
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -2
Query: 346 GCGIHFPADVSEDCPCTFCNSLLRHYVLLFSQNPFLKTIQHLKSLIVFSF 197
G GI F +S+ CN+LL Y + +N L + LK IVFSF
Sbjct: 1037 GMGIGFAFGLSQFLLFA-CNALLLWYTAVAVKNGHLSLVTALKEYIVFSF 1085
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/59 (22%), Positives = 32/59 (54%)
Frame = +1
Query: 253 VKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPL 429
+ ++ H+ +++ ++ +Q+ Q + H QI ++ +H +M +S+N H +L L
Sbjct: 549 IPQQLHHQQQQTQQL--QPVQQVQQSVQEHQQIKIQPVHVSMDASMNTQVADHQMKLQL 605
>10_01_0152 -
1754113-1754286,1754396-1754551,1755273-1756194,
1756364-1756414,1757540-1757946,1758918-1759067,
1759178-1759333,1760175-1761041
Length = 960
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 502 IHPQRDEIDLHQNLRHEEALRNLDVTLFRNELELQNNL 615
++ +D D QNLR A + L+ F +L ++NNL
Sbjct: 821 LYDVQDSSDFCQNLRSLSAAKRLEFDYFGRKLTMENNL 858
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 514 RDEIDLHQNLRHEEALRNLDVTLFRNELELQNNL 615
+D D QNLR A ++L+ EL ++NNL
Sbjct: 263 QDSGDFFQNLRSLSAAKSLEFNYIGKELTMENNL 296
>02_03_0306 -
17540258-17540610,17544063-17544128,17544266-17544397,
17544530-17544685,17545216-17545375
Length = 288
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 274 AEEENYKMYMDSLQKHQL-ESEYHTQISMEQLHQAMQSSLNNSGIVHNFQL 423
AEEE Y D Q HQ E E H Q +++ H + + + +H+F L
Sbjct: 44 AEEEKYGKQPDEEQSHQAEEGEEHDQEQIQEYHVTIAHDFDLN--MHDFDL 92
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 447 GHLPWGEWQLEVVDYTGVVQRGLHSLM-QLLHG 352
G +P G+W VD TG+V+R + M +L++G
Sbjct: 148 GAVPRGDWSTWTVDVTGLVKRPMRLTMDELVNG 180
>03_05_0308 - 22977542-22978174,22978202-22978387
Length = 272
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +1
Query: 208 QLSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSS 387
QL + W ++D +K ++ + + + + MD+L++ +S+ H EQL A+ S+
Sbjct: 46 QLEEEHQAWGSEIDSLKFQQLSDQYNDRRGMMDTLEEQLRKSQEHVSQLEEQLRAAIVST 105
Query: 388 LNNS 399
S
Sbjct: 106 TGAS 109
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 526 DLHQNLRHEEALRNLDVTLFRNELELQNNLSQALVQNLSEQDLRNL 663
DL+ E LR LD+ L + E+ L++A+V N+S +D+ +L
Sbjct: 163 DLYDYYARNELLRALDLRLTVLKEEIFALLNRAVVSNMSTRDVSDL 208
>12_01_0340 -
2605770-2605916,2606353-2606595,2607260-2607531,
2607691-2607733,2607822-2607899,2608026-2608085,
2608272-2608331,2609440-2609577,2609655-2609767,
2610333-2610569,2610867-2610918
Length = 480
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 307 SLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHN 414
SLQ+ ++E +EQLHQ++ ++ N G V N
Sbjct: 370 SLQQSSQQAEEALSQGLEQLHQSLAETVANGGSVVN 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,248,626
Number of Sequences: 37544
Number of extensions: 290052
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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