Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d21
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68227-15|CAJ80810.1| 414|Caenorhabditis elegans Hypothetical p... 30 1.3
Z68227-14|CAJ80809.1| 448|Caenorhabditis elegans Hypothetical p... 30 1.3
Z68227-13|CAA92511.1| 444|Caenorhabditis elegans Hypothetical p... 30 1.3
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p... 29 2.2
AF039715-2|AAB96731.1| 158|Caenorhabditis elegans Hypothetical ... 29 2.2
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 3.0
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 3.0
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 3.0
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 3.9
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 5.2
AC024817-5|ABQ13054.1| 274|Caenorhabditis elegans Hypothetical ... 28 6.8
Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF014939-9|AAB63931.2| 246|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z68227-15|CAJ80810.1| 414|Caenorhabditis elegans Hypothetical
protein F49C12.7c protein.
Length = 414
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 262 EEHNAEEENY-KMYMDSLQKHQLESEYHTQISMEQL 366
EE +A +E Y K Y D L KH E ++ +EQL
Sbjct: 316 EERHANKEKYLKHYFDCLTKHCKEDDHPVPFDLEQL 351
>Z68227-14|CAJ80809.1| 448|Caenorhabditis elegans Hypothetical
protein F49C12.7b protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 262 EEHNAEEENY-KMYMDSLQKHQLESEYHTQISMEQL 366
EE +A +E Y K Y D L KH E ++ +EQL
Sbjct: 346 EERHANKEKYLKHYFDCLTKHCKEDDHPVPFDLEQL 381
>Z68227-13|CAA92511.1| 444|Caenorhabditis elegans Hypothetical
protein F49C12.7a protein.
Length = 444
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 262 EEHNAEEENY-KMYMDSLQKHQLESEYHTQISMEQL 366
EE +A +E Y K Y D L KH E ++ +EQL
Sbjct: 346 EERHANKEKYLKHYFDCLTKHCKEDDHPVPFDLEQL 381
>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
protein 36 protein.
Length = 1249
Score = 29.5 bits (63), Expect = 2.2
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Frame = +1
Query: 184 VVTEKN*RQLSSLNAEWFLKMDFVKREEHN-----AEEENYKMYMDSLQKHQLESEYHTQ 348
V++E S ++ E LK ++ K E AE + K ++ K + + Y +
Sbjct: 31 VLSEHMKETFSKISHETILKQNYEKLVEEEQFDPRAELKKSKHRIEDYLKVRSQFAYKAK 90
Query: 349 ISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQMS--TLMLKTNHLSRSLNFNET 501
IS+E S++N+ +F +S +Q + T + ++NHL + L NET
Sbjct: 91 ISLEARSVRNDSTVNDPQS-KSFIRFMSAKQGNDGTTIYESNHLGKRLKVNET 142
>AF039715-2|AAB96731.1| 158|Caenorhabditis elegans Hypothetical
protein R06A10.3 protein.
Length = 158
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 301 MDSLQKH--QLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPR 438
M L +H QL++ YH E+ HQA++ + + H FQ SPR
Sbjct: 1 MKKLARHREQLKARYHIGSGQERGHQAVEKTAYRQRVQH-FQKSRSPR 47
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 421 LPLSPRQMSTLMLKTNHLSRSLNFNETIHPQ-RDEIDLHQNLRHEEALRNLDVTLFRNEL 597
L LS ++ + T+ L R L E++ + R ID+ HE L + +NEL
Sbjct: 1848 LRLSDSKVQDMKDDTDKLRRDLTKAESVENELRKTIDIQSKTSHEYQLLKDQLLNTQNEL 1907
Query: 598 ELQNNLSQALVQNL 639
NN Q L L
Sbjct: 1908 NGANNRKQQLENEL 1921
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 421 LPLSPRQMSTLMLKTNHLSRSLNFNETIHPQ-RDEIDLHQNLRHEEALRNLDVTLFRNEL 597
L LS ++ + T+ L R L E++ + R ID+ HE L + +NEL
Sbjct: 1921 LRLSDSKVQDMKDDTDKLRRDLTKAESVENELRKTIDIQSKTSHEYQLLKDQLLNTQNEL 1980
Query: 598 ELQNNLSQALVQNL 639
NN Q L L
Sbjct: 1981 NGANNRKQQLENEL 1994
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 421 LPLSPRQMSTLMLKTNHLSRSLNFNETIHPQ-RDEIDLHQNLRHEEALRNLDVTLFRNEL 597
L LS ++ + T+ L R L E++ + R ID+ HE L + +NEL
Sbjct: 1921 LRLSDSKVQDMKDDTDKLRRDLTKAESVENELRKTIDIQSKTSHEYQLLKDQLLNTQNEL 1980
Query: 598 ELQNNLSQALVQNL 639
NN Q L L
Sbjct: 1981 NGANNRKQQLENEL 1994
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 373 AMQSSLNNSGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFN 495
A + +N S H +Q+ SP +LK HL+R FN
Sbjct: 771 AFEQDMNASSSGHAYQMQNSPEVSIGKLLKQQHLNRPNQFN 811
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 292 KMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQ 441
+M+M L +H + ++H ++ M +H Q L +H L P+Q
Sbjct: 1172 QMHMQMLPQHHQQQQHHEEMMM--MHHQQQQQLQQQQQMHQMPLHHLPQQ 1219
>AC024817-5|ABQ13054.1| 274|Caenorhabditis elegans Hypothetical
protein Y54G2A.12 protein.
Length = 274
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 301 MDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIV--HNFQLPLSPRQMSTLMLKTNHL 474
MD+LQ + +SM+Q+ + S+L IV + + + RQ++ + KT +
Sbjct: 1 MDALQAYSDSEHSDNDVSMDQIAKGKSSALLERAIVTAPDVESKSAIRQVAIVDPKTKEI 60
Query: 475 SRSLNFNETIHPQRDEID 528
+ F++ P+ ++
Sbjct: 61 KSNPKFDQLFKPESGPVN 78
>Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical
protein T22H2.6b protein.
Length = 345
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 306 VHVHFVILFFGIMFFSFH 253
V + F IL+F I +FSFH
Sbjct: 19 VRIFFCILYFNIKYFSFH 36
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 306 VHVHFVILFFGIMFFSFH 253
V + F IL+F I +FSFH
Sbjct: 19 VRIFFCILYFNIKYFSFH 36
>AF014939-9|AAB63931.2| 246|Caenorhabditis elegans Hypothetical
protein ZC132.9 protein.
Length = 246
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 443 ICLGESGNWKLWTIPEL 393
+ + SGNW+ W +PEL
Sbjct: 3 VVVAMSGNWQFWNLPEL 19
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,866
Number of Sequences: 27780
Number of extensions: 286254
Number of successful extensions: 846
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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