Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d19
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 31 0.097
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 31 0.097
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 26 3.6
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 3.6
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.8
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 6.3
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 25 6.3
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 6.3
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 6.3
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 6.3
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 25 8.4
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 8.4
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.4
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 31.5 bits (68), Expect = 0.097
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 7 QIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 180
QI +RGN + +PPPPL Y P AT NA NNA TT N +
Sbjct: 48 QIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYA 104
Query: 181 SNSTNSVAIAPYNKSKEPTLD 243
++ ++ +A +N + P +D
Sbjct: 105 NDYSSELAYI-HNVNDMPHVD 124
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 31.5 bits (68), Expect = 0.097
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +1
Query: 181 SNSTNSVAIAPYNKSKEPTLDAGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLM 342
+N + I K+ + AGE++ Y N+C+ F+ + R ++C D +E L+
Sbjct: 476 NNDDPQIQIEILRSLKDTFIKAGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLL 534
Query: 343 IHFINT 360
F+NT
Sbjct: 535 WEFVNT 540
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 432 HDTPPDSVAKRVGTRQRGRVPAERFEYISG----IVCAKFAAGVRAKN 563
+D+ PD++ +RV +QR P + F+ I I AK G+ N
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITN 207
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 61 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 204
PP+ P+ + TN+ ++A G+ PP K++ RS+S N A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 4.8
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +1
Query: 328 LSPLMIHFINTIR-DMCIDTNPINV-----NVVKRFESEETMIRHLIRLQKELGQGNAAE 489
L+ ++ +F+ + D ++TNP V NV K FE ET K L GN
Sbjct: 3 LTSVLWNFVAKLAVDHGLNTNPDQVFQTVENVGKSFEKYETSFL------KSLFNGNLGL 56
Query: 490 SLPSDSNIFQASFVL 534
SLPS NI VL
Sbjct: 57 SLPSAINILTLIIVL 71
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 6.3
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Frame = +1
Query: 121 NNAPGYVPPTTRDNKMDTSRSNST--NSVAIAPYNKSKEPTLDAGESIWYNKCVDFVQKI 294
+N P PP N D S S +T N + +S + D SI N F K
Sbjct: 524 HNGPSTQPPEALPNGTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFTGKR 583
Query: 295 IRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFE 420
+R + + +SP + I I +P N ++V+ E
Sbjct: 584 VRLGNVIESNVVSPDGTNRI-VIEPFERSVDPNNADIVEMVE 624
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -1
Query: 589 QHISATVVKFFARTPAANLAQTMPEIYS 506
+++ TV+ + A+ P + L++++PE YS
Sbjct: 80 EYLWRTVITYLAKHPDSILSKSVPEAYS 107
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 147 YDARQQNGHEPQQQHKLGSDRTVQQEQR 230
Y QQN E Q HK D+ QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 562 FFARTPAANLAQTMPEIYSNRSAGT 488
FFA P +A + ++YSN+ GT
Sbjct: 236 FFASAPLTVVAAALADMYSNKYRGT 260
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 31 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 126
RG Y N PP Y SN ++YNN
Sbjct: 953 RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 562 FFARTPAANLAQTMPEIYSNRSAGT 488
FFA P +A ++YSN+ GT
Sbjct: 235 FFASAPLTVVAAAFADMYSNKHRGT 259
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 1 GVQIKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAP 132
G+ KS TDE PP+R S P ++ + NN+P
Sbjct: 435 GLNPKSFTDEEREILTLFRNPPMRLSSEPPSSNGFSIAHPNNSP 478
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 58 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNS 189
PP P++P + +NA N Y+P R TS ++S
Sbjct: 54 PPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASS 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,898
Number of Sequences: 5004
Number of extensions: 46602
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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