Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d17
(186 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 0.57
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 24 2.3
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 23 4.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 23 4.0
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 23 5.3
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 23 5.3
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 23 5.3
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 23 7.0
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 23 7.0
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 23 7.0
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 22 9.3
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 22 9.3
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 22 9.3
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 22 9.3
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 0.57
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 86 IQANNSPTEGDQLGQFVNRNRSLIKEFVLVEK 181
++ +NSPT + L + RS + +LVEK
Sbjct: 92 VEGSNSPTANEALDSDAKKLRSALTSAILVEK 123
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 124 KLIAFSRRVVGLDDIDD 74
KL F +RV+G D +DD
Sbjct: 529 KLHVFLQRVIGFDSVDD 545
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 23.4 bits (48), Expect = 4.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 47 VTGGRTGNNIVDIIQANNSPTEGDQ 121
V G R GNN+ AN +PT D+
Sbjct: 217 VHGLRLGNNLTRTFWANGNPTPLDR 241
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 51 RAVAPATISSISSKPTTRRLKAINL 125
+ VAP ++++S+ P+T RL + L
Sbjct: 485 KRVAPQLLTTLSATPSTSRLASTQL 509
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 66 ATISSISSKPTTRRLK 113
ATI++ +SKP TRR K
Sbjct: 253 ATITNSNSKPQTRRSK 268
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +2
Query: 20 PTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
PT D I G + + ++ + ++ + +LG+F+ N+ L++
Sbjct: 255 PTVIDSIIDAIDGISKSAVLALTSESDKNSSAKKLGEFIVLNQKLLE 301
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 31 RHYIKSDGRSHRQQYRRYHPSQQ 99
R+Y K D R +YR YH ++
Sbjct: 313 RNYNKRDRDPDRTKYREYHSERR 335
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 22.6 bits (46), Expect = 7.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 1 EEAHYETDGGRHYIKSDGRSHRQ 69
EEA Y + G YI D + H+Q
Sbjct: 59 EEAFYLIEKGISYIVDDTKVHKQ 81
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 22.6 bits (46), Expect = 7.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 174 TKTNSLISDRFLFTNWPS*SPSVGELLAWMISTIL 70
T+ + L S R + + P +G+LLAW+ TI+
Sbjct: 277 TRGDFLSSSRPIELSAPDTVRFIGDLLAWIHQTIV 311
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 22.6 bits (46), Expect = 7.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 71 NIVDIIQANNSPTEGDQLGQF 133
+++++I +PTEGD + QF
Sbjct: 94 HLIEMIPIIYTPTEGDAIKQF 114
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 111 SVGELLAWMISTILLPVRPPV 49
SV L W++ T L ++PP+
Sbjct: 212 SVERLTVWVMETARLILKPPI 232
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 171 KTNSLISDRFLFTNWPS*SP 112
KTN +SDR F PS +P
Sbjct: 341 KTNKQLSDRLAFYEDPSMAP 360
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 111 SVGELLAWMISTILLPVRPPVTL 43
S+ E+ W++ T+ L +RP TL
Sbjct: 170 SLREMTVWVMETMRLFLRPQKTL 192
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 124 KLIAFSRRVVGLDDIDDIVAGA 59
+L++ RRVVG+D D++ A
Sbjct: 50 ELVSQCRRVVGIDASPDMIKAA 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,938
Number of Sequences: 5004
Number of extensions: 10722
Number of successful extensions: 38
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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