Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d17
(186 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0808 + 32134765-32136570 29 0.40
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747... 27 1.6
05_03_0581 + 15736732-15736778,15737021-15737846 27 2.1
12_01_0272 + 1985348-1986036,1986142-1988020 27 2.8
11_01_0271 + 2039100-2041760 27 2.8
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 27 2.8
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 26 3.7
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 26 4.9
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 25 6.5
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 25 6.5
12_02_0269 - 16617292-16618852,16622763-16623562 25 8.5
03_02_0233 - 6622345-6622538,6623526-6624120 25 8.5
02_01_0364 + 2615056-2615239,2615573-2615637,2616016-2616103,261... 25 8.5
02_01_0359 + 2578038-2578221,2578555-2578619,2583179-2583266,258... 25 8.5
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 25 8.5
>01_06_0808 + 32134765-32136570
Length = 601
Score = 29.5 bits (63), Expect = 0.40
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 13 YETDGGRHYIKSDGRSHRQQYRRYHP 90
Y T GR+Y + DG H ++Y +Y P
Sbjct: 558 YRTFTGRYYSRLDGTRHLERYIKYKP 583
>03_06_0775 -
36174098-36174204,36174540-36174594,36174690-36174741,
36174947-36175028,36175110-36175204,36175339-36175727
Length = 259
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 2 KKHIMKPTAADIISRVTGGRTGNNIVDIIQ 91
++ ++KP A + TGGR G+ + D+IQ
Sbjct: 52 QEFVLKPVQATLGPNSTGGRGGSPLPDVIQ 81
>05_03_0581 + 15736732-15736778,15737021-15737846
Length = 290
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 155 LAIGFYLQIGQVDRLQSASCWL 90
+A+GFYL VD ++ A+ WL
Sbjct: 228 VALGFYLSTALVDAVRRATAWL 249
>12_01_0272 + 1985348-1986036,1986142-1988020
Length = 855
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 19 TDGGRHYIKSDGRSHRQQYRRY 84
TDG RHY+ D H +RRY
Sbjct: 363 TDGYRHYLAGDPVLHITYHRRY 384
>11_01_0271 + 2039100-2041760
Length = 886
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 19 TDGGRHYIKSDGRSHRQQYRRY 84
TDG RHY+ D H +RRY
Sbjct: 398 TDGYRHYLAGDPVLHITYHRRY 419
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 20 PTAADIISRVTGGRTGNNI-VDIIQANNSPTE 112
P AAD+I G+TG+ I VDI Q +P +
Sbjct: 475 PAAADVIPSDPCGKTGSGIDVDIEQREENPCQ 506
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 56 GRTGNNIVDIIQANNSPTEGDQLGQFV 136
GR G NI +IIQA+ + + G F+
Sbjct: 301 GRAGRNITEIIQASGARIKISDRGDFI 327
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 46 SDGRSHRQQYRRYHPSQQLAD 108
+DG+ HR + + YH SQ+ A+
Sbjct: 113 ADGKKHRAKAKAYHASQKQAN 133
>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 49 DGRSHRQQYRRYHPSQQLAD*RRSTWPI 132
D +H+ RRY+P A+ RR W +
Sbjct: 1072 DEEAHKFVDRRYYPIMDAAEIRRCPWSV 1099
>03_02_0762 -
10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 EEAHYETDGGRHYIKSDGRSHRQQYRRYHPS 93
++ H +D RH KSD S + + RY PS
Sbjct: 434 KDEHVLSDFCRHASKSDQESSKGESHRYTPS 464
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 151 RSVSIYKLAKLIAFSRRVVGLDDIDDIVAGATAR 50
R SIY L + I+ + R + +DDI ++ G R
Sbjct: 130 RVESIYNLDESISSNPRQIEIDDISPVLCGKANR 163
>03_02_0233 - 6622345-6622538,6623526-6624120
Length = 262
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 25 GGRHYIKSD-GRSHRQQYRRYHPSQQLAD 108
GGR I D GR +Q+RR HP AD
Sbjct: 199 GGRVVIFLDQGRQSLEQHRREHPEVVTAD 227
>02_01_0364 +
2615056-2615239,2615573-2615637,2616016-2616103,
2616202-2616269,2616653-2616703,2617168-2617285,
2617463-2617509,2617603-2617629,2617806-2617881,
2618157-2618296,2618623-2618721
Length = 320
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 2 KKHIMKPTAADIISRVTGGRTGNNIVD 82
KK ++KP + S+VTG + G + +D
Sbjct: 86 KKKLVKPPSGSNASKVTGPKAGPDQID 112
>02_01_0359 +
2578038-2578221,2578555-2578619,2583179-2583266,
2583365-2583432,2583816-2583866,2584331-2584448,
2584626-2584672,2584766-2584792,2584969-2585044,
2585320-2585483
Length = 295
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 2 KKHIMKPTAADIISRVTGGRTGNNIVD 82
KK ++KP + S+VTG + G + +D
Sbjct: 86 KKKLVKPPSGSNASKVTGPKAGPDQID 112
>01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2
Query: 17 KPTAADIISRVTGGRTGNNIVDIIQANNSPTE 112
+P+ + RV G G N + + N PTE
Sbjct: 988 EPSNTAVNGRVQGASPGTNEIPAVSTQNMPTE 1019
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,715,684
Number of Sequences: 37544
Number of extensions: 72338
Number of successful extensions: 238
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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