Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d17
(186 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 0.58
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 0.58
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 0.58
U28943-2|AAA68357.1| 613|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z81592-4|CAB04728.1| 436|Caenorhabditis elegans Hypothetical pr... 25 5.4
U23528-7|AAK31383.2| 254|Caenorhabditis elegans Hypothetical pr... 25 5.4
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 25 5.4
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ... 25 5.4
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ... 25 5.4
Z81494-7|CAI79161.1| 387|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81494-6|CAC42275.1| 451|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z70754-6|CAA94776.1| 242|Caenorhabditis elegans Hypothetical pr... 25 9.4
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ PT+ + +GN I I +A+ +P D G FV + +I++
Sbjct: 4070 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4121
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+++ P++ + + G I ++ + SP D G FVNR+ +++
Sbjct: 2377 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2427
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ P+ ++ + GN I I + + +P D G FV + +I++
Sbjct: 5455 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5506
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ + D+ + TGN I I + + +P D G FV+ + +I++
Sbjct: 3780 YIILSSDTDVTKELPTDDTGNVIYPITKPDGTPLGTDTSGSFVSDDGQIIEK 3831
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+I+ P+ DI + +GN I I + + + D G FV +++
Sbjct: 4445 YILVPSEQDITKTLPTDDSGNVIYPITKPDGTSLATDSTGSFVTEGGEIVE 4495
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 62 TGNNIVDIIQANNSPTEGDQLGQFVNRNRSLI 157
TGN + +I A+ S D G F+ N ++
Sbjct: 11253 TGNVVYPVINADGSLLATDSSGSFITENGKIV 11284
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/50 (18%), Positives = 22/50 (44%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLI 157
+++ PT + +GN I ++ + +P D G F+ + ++
Sbjct: 5600 YVIVPTDGSTVKSHPTDDSGNTIYPVVNEDGTPLSTDLSGNFLTNSGEIV 5649
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ PT+ + +GN I I +A+ +P D G FV + +I++
Sbjct: 4115 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4166
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+++ P++ + + G I ++ + SP D G FVNR+ +++
Sbjct: 2440 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2490
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ P+ ++ + GN I I + + +P D G FV + +I++
Sbjct: 5500 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5551
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ + D+ + TGN I I + + +P D G FV+ + +I++
Sbjct: 3825 YIILSSDTDVTKELPTDDTGNVIYPITKPDGTPLGTDTSGSFVSDDGQIIEK 3876
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+I+ P+ DI + +GN I I + + + D G FV +++
Sbjct: 4490 YILVPSEQDITKTLPTDDSGNVIYPITKPDGTSLATDSTGSFVTEGGEIVE 4540
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 62 TGNNIVDIIQANNSPTEGDQLGQFVNRNRSLI 157
TGN + +I A+ S D G F+ N ++
Sbjct: 11298 TGNVVYPVINADGSLLATDSSGSFITENGKIV 11329
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/50 (18%), Positives = 22/50 (44%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLI 157
+++ PT + +GN I ++ + +P D G F+ + ++
Sbjct: 5645 YVIVPTDGSTVKSHPTDDSGNTIYPVVNEDGTPLSTDLSGNFLTNSGEIV 5694
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ PT+ + +GN I I +A+ +P D G FV + +I++
Sbjct: 4115 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4166
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+++ P++ + + G I ++ + SP D G FVNR+ +++
Sbjct: 2440 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2490
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ P+ ++ + GN I I + + +P D G FV + +I++
Sbjct: 5500 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5551
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ + D+ + TGN I I + + +P D G FV+ + +I++
Sbjct: 3825 YIILSSDTDVTKELPTDDTGNVIYPITKPDGTPLGTDTSGSFVSDDGQIIEK 3876
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+I+ P+ DI + +GN I I + + + D G FV +++
Sbjct: 4490 YILVPSEQDITKTLPTDDSGNVIYPITKPDGTSLATDSTGSFVTEGGEIVE 4540
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 62 TGNNIVDIIQANNSPTEGDQLGQFVNRNRSLI 157
TGN + +I A+ S D G F+ N ++
Sbjct: 11298 TGNVVYPVINADGSLLATDSSGSFITENGKIV 11329
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/50 (18%), Positives = 22/50 (44%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLI 157
+++ PT + +GN I ++ + +P D G F+ + ++
Sbjct: 5645 YVIVPTDGSTVKSHPTDDSGNTIYPVVNEDGTPLSTDLSGNFLTNSGEIV 5694
>U28943-2|AAA68357.1| 613|Caenorhabditis elegans Hypothetical
protein E04F6.5a protein.
Length = 613
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 38 ISRVTGGRTGNNIVDIIQAN 97
+SRVTGG TG+N ++ A+
Sbjct: 467 VSRVTGGNTGSNFGQVVDAS 486
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 18 NRRRPTLYQE*RAVAPATISSISSKPTTRRLKAINLA 128
+R+ P L R+ P T +S+ PTT L+ + A
Sbjct: 1504 SRQSPNLSARRRSYQPTTTTSMIVPPTTHHLRGFSAA 1540
>Z81592-4|CAB04728.1| 436|Caenorhabditis elegans Hypothetical
protein T16G1.4 protein.
Length = 436
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 109 SRRVVGLDDIDDIVAGATARHS*YNVGRRRFHNVL 5
++ ++G++ +DD+ T RH YNV H+VL
Sbjct: 156 TKGILGMEAVDDV----TVRHLYYNVKPFELHSVL 186
>U23528-7|AAK31383.2| 254|Caenorhabditis elegans Hypothetical
protein B0034.1 protein.
Length = 254
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 47 VTGGRTGNNIVDIIQANNSPTEGDQLGQF 133
+ GGR G + +Q N P G GQF
Sbjct: 84 IGGGREGVEMGSQVQFGNEPNPGHPAGQF 112
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 18 NRRRPTLYQE*RAVAPATISSISSKPTTRRLKAINLA 128
+R+ P L R+ P T +S+ PTT L+ + A
Sbjct: 1504 SRQSPNLSARRRSYQPTTTTSMIVPPTTHHLRGFSAA 1540
>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
protein Y47D3B.5b protein.
Length = 1136
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 1 EEAHYETDGGRHYIKSDGRSHRQQYRRYHPSQ 96
E +HY GGR GR +Q RY SQ
Sbjct: 1021 ERSHYYFGGGRRASLGRGRKKPRQDMRYGESQ 1052
>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
protein Y47D3B.5a protein.
Length = 1088
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 1 EEAHYETDGGRHYIKSDGRSHRQQYRRYHPSQ 96
E +HY GGR GR +Q RY SQ
Sbjct: 1021 ERSHYYFGGGRRASLGRGRKKPRQDMRYGESQ 1052
>Z81494-7|CAI79161.1| 387|Caenorhabditis elegans Hypothetical
protein F02E9.10b protein.
Length = 387
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 13 YETDGGRHYIKSDGRSHRQQYRRYHP 90
Y +GG Y +S QY+ Y+P
Sbjct: 317 YTQEGGHEYYRSHEEYDAAQYQEYNP 342
>Z81494-6|CAC42275.1| 451|Caenorhabditis elegans Hypothetical
protein F02E9.10a protein.
Length = 451
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 13 YETDGGRHYIKSDGRSHRQQYRRYHP 90
Y +GG Y +S QY+ Y+P
Sbjct: 381 YTQEGGHEYYRSHEEYDAAQYQEYNP 406
>Z70754-6|CAA94776.1| 242|Caenorhabditis elegans Hypothetical
protein F58E6.6 protein.
Length = 242
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 54 AVAPATISSISSKPTTRRLKAINLAN 131
+V+P T+S+ +S P++R I+++N
Sbjct: 141 SVSPTTVSTSTSIPSSRSFAVISVSN 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,925,487
Number of Sequences: 27780
Number of extensions: 60145
Number of successful extensions: 230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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