Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d17
         (186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   0.58 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   1.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   1.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   1.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   1.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   1.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   1.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   1.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   1.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   3.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   4.1  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              19   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    18   9.5  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           18   9.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    18   9.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           18   9.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 0.58
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRYHPSQQLAD*RRSTWPI 132
           Y T G  H+    G SH      +H S       + + P+
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 113 GDQLGQFVNRNRSLI 157
           G+Q+ +F+N N  L+
Sbjct: 203 GEQMNRFINENSELL 217


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 56  GRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKEFVLVE 178
           GRTG N  +    +N+  E +  G   NRN    K F   E
Sbjct: 99  GRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTFAARE 139


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -3

Query: 145 VSIYKLAKLIAFSRRVVGLDDI 80
           ++I  +  ++ FS+R+ G D++
Sbjct: 381 ITILTVQLIVEFSKRLPGFDEL 402



 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +2

Query: 80  DIIQANNSPTEGDQLGQFVNRN 145
           D+ +  N P+EG+ +  +  R+
Sbjct: 356 DLKRITNQPSEGEDISDYKFRH 377


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 127 AKLIAFSRRVVGLDDIDD 74
           A ++ F   V+GLD ID+
Sbjct: 60  ATVVYFHVTVMGLDSIDE 77


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 31  RHYIKSDGRSHRQQYRRYHPSQQ 99
           RH  KSD +++ Q   + H S +
Sbjct: 433 RHSSKSDNQNNNQHNDQAHHSSK 455


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 53  GGRTGNNIVDIIQANNSPTEGDQL 124
           G     N  DI+QA     E DQL
Sbjct: 77  GNFNEKNTRDIVQAVLDDNETDQL 100


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 101 SPTEGDQLGQFVNRNRSLI 157
           S TE  Q+GQ+V  N  ++
Sbjct: 435 SNTERLQVGQYVTVNGDVV 453


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 89  QANNSPTEGDQLGQFVNRNRSLIKEFV 169
           Q  NS  +  Q+G F+      +KE +
Sbjct: 244 QTENSLEKAKQVGAFMGCPTRNVKEMI 270


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 89  QANNSPTEGDQLGQFVNRNRSLIKEFV 169
           Q  NS  +  Q+G F+      +KE +
Sbjct: 115 QTENSLEKAKQVGAFMGCPTRNVKEMI 141


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 63  VRPPVTLDIMSAAVGFIMCFF 1
           V  P+T D+  AAV +   F+
Sbjct: 101 VSHPLTGDLSPAAVSYTSGFY 121


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 89  QANNSPTEGDQLGQFVNRNRSLIKEFV 169
           Q  NS  +  Q+G F+      +KE +
Sbjct: 244 QTENSLEKAKQVGAFMGCPTRNVKEMI 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,810
Number of Sequences: 438
Number of extensions: 774
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)