Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d16
         (156 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P08358 Cluster: Protein p26; n=9; Nucleopolyhedrovirus|...    70   1e-11
UniRef50_Q4S6M0 Cluster: Chromosome undetermined SCAF14725, whol...    32   2.1  
UniRef50_Q35945 Cluster: Yeast (S.uvarum) mitochondria RF2; n=1;...    31   4.9  
UniRef50_Q7VMZ8 Cluster: Lipoprotein C-like protein; n=6; Pasteu...    31   6.4  
UniRef50_A2ENT4 Cluster: Putative uncharacterized protein; n=1; ...    31   6.4  

>UniRef50_P08358 Cluster: Protein p26; n=9;
          Nucleopolyhedrovirus|Rep: Protein p26 - Autographa
          californica nuclear polyhedrosis virus (AcMNPV)
          Length = 240

 Score = 69.7 bits (163), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = -1

Query: 96 MELYNIKYAIDPTNKIVIEQVDNVDAFVHILE 1
          MELYNIKYAIDPTNKIVIEQVDNVDAFVHILE
Sbjct: 1  MELYNIKYAIDPTNKIVIEQVDNVDAFVHILE 32


>UniRef50_Q4S6M0 Cluster: Chromosome undetermined SCAF14725, whole
           genome shotgun sequence; n=3; Tetraodontidae|Rep:
           Chromosome undetermined SCAF14725, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 878

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 90  LYNIKYAIDPTNKIVIEQVDNVDAFVHIL 4
           L NI Y  DP NKI I+  D V A V +L
Sbjct: 373 LKNISYGKDPDNKIAIKNCDGVPALVRLL 401


>UniRef50_Q35945 Cluster: Yeast (S.uvarum) mitochondria RF2; n=1;
           Saccharomyces bayanus|Rep: Yeast (S.uvarum) mitochondria
           RF2 - Saccharomyces bayanus (Yeast) (Saccharomyces
           uvarum)
          Length = 101

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 117 TLNRTDVMELYNIKYAIDPTNKIVIEQVDN 28
           TL +TD++ L NIKY ++ T+KI ++   N
Sbjct: 66  TLKKTDIITLENIKYYLNLTSKIYVDNKYN 95


>UniRef50_Q7VMZ8 Cluster: Lipoprotein C-like protein; n=6;
           Pasteurellaceae|Rep: Lipoprotein C-like protein -
           Haemophilus ducreyi
          Length = 583

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 29  LSTCSITILFVGSIAYLILYNSITSVRFNV*LANKLFNYQKK 154
           LS C+ T LF  S+ YLI   +  S  F +  A +  N Q K
Sbjct: 22  LSACNSTSLFENSVTYLIKQEAYASSEFYINKAEQTLNSQDK 63


>UniRef50_A2ENT4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 877

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 11  CTNASTLSTCSITILFVGSIAYLILYNSITSVRFNV*LANKLFNYQKK 154
           CTN    S+    ILF G   +L+L N IT  R ++  A K+FN  +K
Sbjct: 713 CTNFPNFSS---QILFNGEFVHLLLDNLITGTRKSMDAAWKIFNAAEK 757


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,091,159
Number of Sequences: 1657284
Number of extensions: 1807985
Number of successful extensions: 4958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4957
length of database: 575,637,011
effective HSP length: 32
effective length of database: 522,603,923
effective search space used: 9929474537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)