Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d16
(156 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 0.77
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 25 1.3
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 24 2.4
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 23 4.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 23 4.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 23 5.4
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 23 7.2
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 23 7.2
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 22 9.5
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 22 9.5
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 22 9.5
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 93 ELYNIKYAIDPTNKIVIEQV 34
+LYNI+YA+ PT +I I ++
Sbjct: 621 QLYNIQYAMLPTKRISIRKL 640
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 1.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 117 TLNRTDVMELYNIKYAIDPTNKIVIEQ 37
T + D M YN K + DPT+ ++ ++
Sbjct: 84 TASEKDAMSYYNSKLSEDPTHTVIYKR 110
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/33 (24%), Positives = 22/33 (66%)
Frame = +1
Query: 13 HKCVHIVDLLYYNFICWIDCIFNIIQFHNVRSI 111
++C+ + YY+ I ++ +F ++ F+++R+I
Sbjct: 262 YECLWLSCHFYYSIIYLLNSMFYLLTFYSLRAI 294
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -1
Query: 117 TLNRTDVMELYNIKYAIDPTNKIVIEQV---DNVDAFVHILE 1
T N+ + +LYN A+ TN+ +I Q+ + +D+ + +LE
Sbjct: 262 TFNQQN-QDLYNQTEALKSTNEELINQIKSAEELDSAIQVLE 302
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 19 CVHIVDLLYYNFICWIDCIF 78
C H ++L +NF +DC F
Sbjct: 486 CTHSSEILVWNFDDGLDCTF 505
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 23.0 bits (47), Expect = 5.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = -1
Query: 126 ASYTLNRTDVM-ELYNIKYAIDPTNKIVIEQ------VDNVDAFVHIL 4
AS N+ V E N ++P N +E VD VDAF H+L
Sbjct: 25 ASSPANKNQVKGEKNNKTQKVEPKNAFKVENQSNDIGVDTVDAFDHLL 72
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 117 TLNRTDVMELYNIKYAID 64
TLN TD++ YN Y I+
Sbjct: 161 TLNGTDMIHYYNKTYVIN 178
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 123 SYTLNRTDVMELYN 82
S TLNRT+ ++LYN
Sbjct: 660 SRTLNRTEKVKLYN 673
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 127 CKLYVESNGRY 95
CKLY +SNG Y
Sbjct: 409 CKLYWQSNGDY 419
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 17 NASTLSTCSITILFVGSIAYLIL 85
+A + S C IT+L + IA L+L
Sbjct: 199 SADSKSGCCITVLIIILIALLVL 221
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 25 HIVDLLYYNFICWIDCIFNIIQFHNVR 105
H++ Y +CW D F+ + N+R
Sbjct: 624 HVIIGSYDKRLCWFDLDFSSKPYKNLR 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,455
Number of Sequences: 5004
Number of extensions: 8647
Number of successful extensions: 23
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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