Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d16
         (156 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55...    28   0.89 
04_01_0347 - 4546566-4546604,4546710-4546748,4546834-4547059,454...    25   6.3  
10_01_0169 - 1899491-1899666,1901358-1901638,1902468-1902477,190...    25   8.3  
03_03_0235 - 15688002-15688040,15688146-15688184,15688270-156885...    25   8.3  

>08_01_0077 +
           546473-546512,546739-547013,547772-547885,548002-550245
          Length = 890

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 81  IKYAIDPTNKIVIEQVDNVDAFVHILE 1
           +  +I+  NKI I   D VD  +H+LE
Sbjct: 621 LNLSINDNNKIAIANADAVDPLIHVLE 647


>04_01_0347 -
           4546566-4546604,4546710-4546748,4546834-4547059,
           4547222-4547374,4547453-4547706,4547734-4548366,
           4548453-4548899,4548978-4549277,4549386-4549697,
           4550190-4550243
          Length = 818

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 105 TDVMELYNIKYAIDPTNKIVIEQVDNVDAF 16
           TD++  ++ K  +DPTN IV++  D  D +
Sbjct: 623 TDILGEHDGKSFLDPTNYIVVDFKDLFDLY 652


>10_01_0169 -
           1899491-1899666,1901358-1901638,1902468-1902477,
           1902696-1902786,1903993-1904031,1904117-1904405,
           1904488-1904658,1904737-1905623,1905711-1906157,
           1906236-1906460,1906536-1906943
          Length = 1007

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 105 TDVMELYNIKYAIDPTNKIVIEQVDNVDAF 16
           TD++  ++ K  +DPTN IV++  D  D +
Sbjct: 612 TDILGQHDGKPFLDPTNYIVVDFNDLFDLY 641


>03_03_0235 -
           15688002-15688040,15688146-15688184,15688270-15688558,
           15688641-15688811,15688907-15689400,15690377-15690819,
           15690921-15690933
          Length = 495

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 105 TDVMELYNIKYAIDPTNKIVIEQVDNVDAF 16
           TD++E ++ K  + PTN IV++  D  D +
Sbjct: 279 TDILEEHDGKPFLGPTNYIVVDFKDLFDLY 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,611,299
Number of Sequences: 37544
Number of extensions: 43360
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)