Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d16
         (156 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF016679-5|AAB66157.1|  485|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    25   7.3  
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        25   7.3  
Z83116-9|CAD89748.1|  374|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    25   9.6  

>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 49  NFICWIDCIFNII 87
           N +CW++CI NI+
Sbjct: 188 NHLCWLNCILNIL 200


>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 2   SRICTNASTLSTCSITILFVGSIAYLILYNSI 97
           S I TN   +ST   T+L+    +  ILYN I
Sbjct: 273 SMIATNIEVMSTPLTTVLYDWKDSQAILYNGI 304


>AF016679-5|AAB66157.1|  485|Caenorhabditis elegans Hypothetical
           protein T28C12.2 protein.
          Length = 485

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   ICTNASTLSTCSITILFVGSIAYLILYNSIT 100
           I TN   +ST   T+L+    +  ILYN IT
Sbjct: 265 IATNVEVMSTPLTTVLYDWKDSDSILYNGIT 295


>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +2

Query: 38  CSITILFVGSIAYLILYNSITSVRF 112
           C++T +F   IA+ I+++++  +RF
Sbjct: 112 CAVTAVFKYIIAFPIIFHTLNGIRF 136


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +2

Query: 38  CSITILFVGSIAYLILYNSITSVRF 112
           C++T +F   IA+ I+++++  +RF
Sbjct: 112 CAVTAVFKYIIAFPIIFHTLNGIRF 136


>Z83116-9|CAD89748.1|  374|Caenorhabditis elegans Hypothetical
           protein M01B2.11 protein.
          Length = 374

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 120 YTLNRTDVMELYNIKYAIDPTNKI 49
           + +N TD  +LY++ +AID + ++
Sbjct: 19  FEINSTDTFDLYDLLHAIDLSGQL 42


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 49   NFICWIDCIFNIIQ 90
            +FIC++DC++ I Q
Sbjct: 1337 SFICFLDCVYQISQ 1350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,771
Number of Sequences: 27780
Number of extensions: 48441
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)