Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d16
         (156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   3.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   5.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   7.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    19   7.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              18   9.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    18   9.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 41 SITILFVGSIAYLILY 88
          SIT++ +GSI ++I +
Sbjct: 52 SITLIVLGSIIFVISF 67


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +1

Query: 58  CWIDCIFNIIQFHN 99
           C++DC+   + F N
Sbjct: 61  CYVDCMLKKVGFVN 74


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 93  ELYNIKYAIDPTN 55
           +LYN+K  +D  N
Sbjct: 396 DLYNVKNTLDSYN 408


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
          protein.
          Length = 149

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +1

Query: 10 MHKCVHIVDLLYY 48
          +H C   +D LY+
Sbjct: 50 LHSCFQTMDRLYF 62


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 111 NRTDVMELYNIKYAIDPTNKIVIEQVDNVDAFVHI 7
           N   V E+  I    +  NK++ E     DA +H+
Sbjct: 80  NEVVVREIAEIYLDENEVNKLITECSAISDADIHL 114


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 130 ICKLYVESNGRYGIV 86
           IC LYV S   YG++
Sbjct: 279 ICFLYVLSWTPYGVM 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,717
Number of Sequences: 438
Number of extensions: 545
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)