Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d12
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   1.4  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    24   3.2  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    24   3.2  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    23   4.2  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    23   4.2  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    23   5.5  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    23   5.5  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    23   5.5  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    23   7.3  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    23   7.3  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    23   7.3  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    22   9.6  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    22   9.6  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    22   9.6  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 99   ELAEFDLKNLSSLXSYETLKIKLALXKYM 185
            EL +   K L+S+  YE +KIK +   Y+
Sbjct: 1959 ELCQASFKFLASILPYENVKIKESTINYL 1987


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 95  GFLDLFI-AVYNFGDRSNFVAFDTFHF 18
           GF+ + I A+  F DRS  VAF +F +
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRY 146


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -2

Query: 94  VFWIFSSLFTISVTVRTLLHLTRFIFIHL 8
           ++W FSS+   ++ + + + L +FIF+ +
Sbjct: 134 MYWRFSSVHFQTLRLASAIQLKKFIFVKI 162


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -2

Query: 205 SRVLSIAMYLXSANLIFRVS*LXKLLRFFKSNSAN-----S*VFWIFSSLFTISVTVRTL 41
           S +L+I+M+L    L +       LLR  KS S       S  FW+F  +FT S  V ++
Sbjct: 201 STLLAISMFLGFITLTW-------LLRCIKSQSGVQPAQISLAFWVFIFVFTHSYQVYSM 253

Query: 40  LHLTRFIF 17
           + + R  F
Sbjct: 254 VAIGRGSF 261


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 202 RVLSIAMYLXSANLIFRVS*LXKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLTRF 23
           R+LSIA +L S + + R+    +    +  N+  S V   +    T SV V+  L + R+
Sbjct: 16  RILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEILRY 71

Query: 22  IF 17
            +
Sbjct: 72  YY 73


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 156 SEFHSFXNCLDFLNQIRPIRRFFGSFHRCLQ-FR*PFE 46
           S  H F +CL F+N      +F  +  R LQ FR P E
Sbjct: 772 SVMHEFIDCLSFIN-----LKFVDALRRLLQCFRLPGE 804


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 15  IKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLXS 143
           ++++ ++C    T+TEIVN  +K++   +L   ++ NL+   S
Sbjct: 240 LQIEELRCAACETMTEIVN--KKMKPLEKLNLLNILNLNLFFS 280


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 80  FIAVYNFGDRSNFVAFDTFH 21
           F+ VYN   RS+F    TF+
Sbjct: 83  FLLVYNITSRSSFDEISTFY 102


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 82  FSSLFTISVTVRTLLH 35
           F S+F +S T R LLH
Sbjct: 254 FDSIFQLSPTTRRLLH 269


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 116 IKFGQFVGFLDLFIAVYN 63
           +KFG+  GFL+ +I  YN
Sbjct: 422 LKFGEGDGFLNYYIYNYN 439


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 121 FKSNSANS*VFWIFSSLFT 65
           F  NSAN  ++WI  S ++
Sbjct: 7   FSGNSANLMLYWILKSYYS 25


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 42  KVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLXSY 146
           ++  V + V  +EK ++  ++AE DLK   ++  Y
Sbjct: 649 ELEPVVQKVLDEEKQERELKIAERDLKKGENIMKY 683


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 104 QFVGFLDLFIAVYNFGDRSNF 42
           +F  F+  F   +N GD+SN+
Sbjct: 367 EFPSFVKNFFHEWNHGDKSNY 387


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 60  EIVNSDEKIQKTYELAEFDLKNLSSLXSY 146
           E  +  E IQK YE+ E +   + S  ++
Sbjct: 730 EASSQQENIQKAYEIIEKEFPTIGSAENH 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,022
Number of Sequences: 5004
Number of extensions: 11016
Number of successful extensions: 39
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)