Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d12
         (206 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     27   1.6  
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     27   1.6  
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    26   4.8  
08_02_1594 + 28111622-28111833,28111979-28112696                       25   6.3  
09_06_0341 + 22406709-22407860                                         25   8.4  

>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 12  CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLXSYETLKIKLALXKYMAM 191
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++      + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 192 LSTLE 206
             TL+
Sbjct: 290 AETLD 294


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 12  CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLXSYETLKIKLALXKYMAM 191
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++      + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 192 LSTLE 206
             TL+
Sbjct: 290 AETLD 294


>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 130 LRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLTRF 23
           L FF + SA   V W F  LFT  + V  + HL R+
Sbjct: 607 LSFFLTLSA---VAWFFYGLFTNDLYVTVIKHLDRY 639


>08_02_1594 + 28111622-28111833,28111979-28112696
          Length = 309

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 133 LLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLTRFIFIHLST 2
           ++  F    A++  F   S LFTI   VR  LH      +HL T
Sbjct: 241 IIAAFMERDADAWAFHSGSELFTILYAVRIYLHSPYVYDLHLFT 284


>09_06_0341 + 22406709-22407860
          Length = 383

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 18  KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLXSYE 149
           +MK V       + E+  +D  +++  EL+  DLKNL+ + S E
Sbjct: 310 RMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLADIESPE 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,387,740
Number of Sequences: 37544
Number of extensions: 56951
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)