Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d12
(206 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical pr... 28 1.0
AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical ... 28 1.0
AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical ... 28 1.0
Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical p... 27 1.8
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z82054-3|CAB04841.2| 269|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical p... 25 5.6
Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 25 7.4
Z74032-1|CAA98465.3| 342|Caenorhabditis elegans Hypothetical pr... 25 9.7
>Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical
protein H25K10.6 protein.
Length = 518
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 63 IVNSDEKIQKTYELAEFDLKNLSSLXSYETLKIKLALXKYMAMLS 197
I++S ++ E+A D +NLS L ET+ K + M ML+
Sbjct: 247 ILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTMLN 291
>AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical
protein K06A5.8a protein.
Length = 874
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 135 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 34
N LDF+ ++P+ F FG+F + FEL C+
Sbjct: 80 NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114
>AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical
protein K06A5.8b protein.
Length = 942
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 135 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 34
N LDF+ ++P+ F FG+F + FEL C+
Sbjct: 80 NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114
>Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical
protein ZK1098.3 protein.
Length = 784
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 15 IKMKRVKCNKVRTVTEIVNSDEKIQKTY 98
I + + C+KV+ V E++ +K+QK+Y
Sbjct: 200 ITLPLILCDKVQIVDELLKISKKLQKSY 227
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 30 VKCNKVRTVTEIVNSD-EKIQKTYELAE 110
V+C RTVT IVN+D K+ K + L E
Sbjct: 45 VECPFCRTVTNIVNNDITKLLKNFALIE 72
>Z82054-3|CAB04841.2| 269|Caenorhabditis elegans Hypothetical
protein T26F2.2 protein.
Length = 269
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 18 KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKN 125
K+ +C+KV T N DEK+ K + AE D N
Sbjct: 110 KVSNAECSKVVLRTTFKNDDEKL-KVFYAAEVDAIN 144
>Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 30 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSS 134
V+ K+R + E V +DEK+ KT+E E + +L S
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVEKVIGSLES 194
>Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical
protein F02E9.9a protein.
Length = 707
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 30 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSS 134
V+ K+R + E V +DEK+ KT+E E + +L S
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVEKVIGSLES 156
>Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 30 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSS 134
V+ K+R + E V +DEK+ KT+E E + +L S
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVEKVIGSLES 194
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 124 FFKSNSANS*VFWIFSSLFTISVTVRTLLH 35
F++ + N W+F+ L I V V+ L+H
Sbjct: 533 FWEGSIINMSYVWVFNILMIIYVVVKLLIH 562
>Z74032-1|CAA98465.3| 342|Caenorhabditis elegans Hypothetical
protein F35B12.2 protein.
Length = 342
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 42 KVRTVTEIVNSDEKIQKTYELAEFDLKN 125
++RTV V+ DE ++KT E + L N
Sbjct: 89 RLRTVPLDVSKDESVEKTVEFVKKSLGN 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,154,273
Number of Sequences: 27780
Number of extensions: 60824
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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