Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d12
         (206 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   0.22 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   4.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          19   6.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         19   6.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      19   6.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   6.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    19   6.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    19   6.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   8.2  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 0.22
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 77  IAVYNFGDRSNFVAFDTF 24
           I ++ F D SNF+A +TF
Sbjct: 177 INIHLFHDASNFIAMETF 194


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  EKIQKTYELAEFDLKNLSSLXSYE 149
           E+   T++ +EFD  N   + SYE
Sbjct: 91  EQSHLTWKSSEFDSINSIRVKSYE 114


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 72  SDEKIQKTYELAEFDLKNLSSLXSYETLKIKLALXKY 182
           +DE +QK Y +A  D  ++    +Y  +   L    Y
Sbjct: 170 NDEVMQKAYNIAMGDTADMKK--TYNNIDYYLLAANY 204


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 72  SDEKIQKTYELAEFDLKN--LSSLXSYETLKIKLALXKYMAMLSTL 203
           SDE+ Q      E+D KN   S +  +   KI + + +Y  + S+L
Sbjct: 46  SDERRQDAILSGEYDYKNNYPSDIDQWHD-KIFVTMLRYNGVPSSL 90


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 72  SDEKIQKTYELAEFDLKNLSSLXSYETLKIKLALXKY 182
           +DE +QK Y +A  D  ++    +Y  +   L    Y
Sbjct: 170 NDEVMQKAYNIAMGDTADMKK--TYNNIDYYLLAANY 204


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 4/11 (36%), Positives = 8/11 (72%)
 Frame = +1

Query: 166 WRSXNTWLCSA 198
           W + + W+C+A
Sbjct: 141 WLAVDVWMCTA 151


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 72  SDEKIQKTYELAEFDLKN--LSSLXSYETLKIKLALXKYMAMLSTL 203
           SDE+ Q      E+D KN   S +  +   KI + + +Y  + S+L
Sbjct: 46  SDERRQDAILSGEYDYKNNYPSDIDQWHD-KIFVTMLRYNGVPSSL 90


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 72  SDEKIQKTYELAEFDLKN--LSSLXSYETLKIKLALXKYMAMLSTL 203
           SDE+ Q      E+D KN   S +  +   KI + + +Y  + S+L
Sbjct: 46  SDERRQDAILSGEYDYKNNYPSDIDQWHD-KIFVTMLRYNGVPSSL 90


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 10/53 (18%), Positives = 27/53 (50%)
 Frame = +3

Query: 12  CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLXSYETLKIKLA 170
           CI M  +     + V+ +VN ++ +++  +    D    ++  S ++ +I++A
Sbjct: 221 CIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTSSQSAEIRIA 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,487
Number of Sequences: 438
Number of extensions: 778
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)