Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d11
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    29   0.36 
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    28   0.83 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   1.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.9  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   1.9  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    27   2.5  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   5.9  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   5.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.7  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 207 YWSTACLWTANPEDISWWTANL 142
           YW + C+   NPE +S W +NL
Sbjct: 112 YWRSMCIQFDNPEMLSQWASNL 133


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
 Frame = -2

Query: 560 FKKKALLTIQKSRWSPHGNKPGTPSAIFIDVIFPAVDHXXXXXXXXXXXFNKQGFIWRRS 381
           FK    +  Q+  + P+  KP TP    +D+    + H           F    F++R  
Sbjct: 366 FKISVRVCSQRYPYPPNATKPATPLGYMLDICCIGIQHNMKLNLSATMYFLYFSFVYRAM 425

Query: 380 TVIVTWGALTPFELLQ-----FHFIDRFYLNIDVS 291
           T +V  G    +  L+     F F+D   + I+ S
Sbjct: 426 TSLVQDGIRMEYHWLELWRVLFSFLDFVSVLINTS 460


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +3

Query: 387  PPYESLFVKPKCKGSEKRSKMINGREYYVYEDGRGGTRLIPVRT 518
            PP ESL  K K K S+      NG +      GRGG R  P+R+
Sbjct: 1268 PPPESLIHKSKSKFSKGNHHSTNGTQSI---RGRGGKRGKPLRS 1308


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 53  KHVITNPPDPLTVL 12
           +H++ NPP PLTVL
Sbjct: 499 RHILDNPPKPLTVL 512


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 81  VYWVGLAYILQSGIIDYLEHKDLPSTTICPL 173
           VY  G+ Y+L   +I+YL  K L ++   PL
Sbjct: 166 VYGTGVIYVLTIALINYLISKSLKNSIFNPL 196


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 428 LRKTFEDDQRQGILRL*RWPRGYQAYSREDSIGF 529
           L+ +F DD   G+ R   W  GY   S+ DSI F
Sbjct: 231 LQSSFGDDLDLGMQRSATWAPGYNYPSKFDSIPF 264


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 99  QDRPSRPNGKPSTSPKARHYESS*SIN 19
           Q  PS PNGK + SP A       S+N
Sbjct: 40  QQPPSTPNGKEAASPSALKQNVRPSLN 66


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +3

Query: 363 PRYDDSGPPPYE----SLFVKPKCKGSEKRSKMINGR 461
           PR  D  PPPY     S+F      G  +  K+IN R
Sbjct: 110 PRKSDEAPPPYSYNFLSMFGTAFLNGFRRGRKLINQR 146


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 236  HYVISHHEVTIGQLPVFG---LQIQRTYRGGRQIFVFKIIYNTRL*YVC 99
            HY + ++E  +G  P+     +    +       F F+  YN RL Y+C
Sbjct: 941  HYAVKYYEAVLGLSPMSQGDKMTSSESTVSTTYDFGFEAAYNLRLIYIC 989


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,584
Number of Sequences: 5004
Number of extensions: 50181
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)