Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d11
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0116 + 14805972-14806511,14807095-14807232,14809906-14810352     30   1.1  
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062...    29   2.6  
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102...    28   6.0  
02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700...    27   7.9  
01_06_0583 + 30400317-30401681                                         27   7.9  

>09_04_0116 + 14805972-14806511,14807095-14807232,14809906-14810352
          Length = 374

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +3

Query: 36  IRNDVLWATSTV---YHSVYWVGLAYILQSGIIDYLEHKDLPSTTICP--LDLQSKDRQL 200
           IR    WA++     YH V W+ LA+  + G I  +E + L +  +    + ++S D+ L
Sbjct: 17  IRGKYYWASNKQGRKYHIVRWIDLAFSKEFGGIGLIETRTLNTALLAKWIMKIESDDKSL 76

Query: 201 TNSHLMMTYYIMCVGL 248
               L+   Y+   G+
Sbjct: 77  CIELLLRKKYLHGKGI 92


>02_05_0530 -
           29804939-29805547,29805658-29805885,29805978-29806261,
           29807095-29807199,29807648-29808155
          Length = 577

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   VVPKSTVNGSGGFVMTCFGRRRRFTIRS 84
           +VP+    G GG +M   GR R++ +RS
Sbjct: 120 IVPQEAAVGGGGAMMAVVGRSRQYVLRS 147


>05_01_0154 +
           1020650-1022050,1022304-1022373,1022496-1022617,
           1022753-1023031,1023402-1023779,1024079-1024188,
           1024394-1024622,1024725-1025303
          Length = 1055

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 120 IIDYLEHKDLPSTTICPLDLQSKDRQLTNSHLMMTYYIMCVGLA 251
           +++   H  L   ++ PLD +S+   L N H M    + C+G A
Sbjct: 537 LLERSSHIQLQDGSVVPLDEKSRKAILENLHEMSIKALRCLGFA 580


>02_02_0121 +
           7005356-7005418,7007533-7007632,7007713-7007810,
           7007933-7008021,7008111-7008171,7008253-7008339,
           7008409-7008486,7008583-7008639,7008731-7008786,
           7008877-7009012,7009103-7009324
          Length = 348

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 YYNRVL*IILNTKICRPPRYVLW 174
           Y +RVL +IL + +C+PP +  W
Sbjct: 140 YRDRVLGLILVSPLCKPPTWTEW 162


>01_06_0583 + 30400317-30401681
          Length = 454

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 56  GDVDGLPFGLLGRSCI 103
           G VDG PF LLG +C+
Sbjct: 430 GSVDGYPFRLLGHACL 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,205,695
Number of Sequences: 37544
Number of extensions: 332143
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)