Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d11
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 410 NKQGFIWRRSTVIVTWGALTPFELL 336
           +K+ + WR ++V++ W A     L+
Sbjct: 384 DKKQYTWRHTSVLIGWSAFLCISLV 408



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 33  RIRNDVLWATSTVYHSVYWVGL 98
           R+++  +W    V HSV  VG+
Sbjct: 109 RVKSYEIWVPDIVMHSVTSVGI 130


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 539 TIQKSRWSPHGNKPGTPSAIFIDVIF 462
           TI   +W+ +    G PSA  ID IF
Sbjct: 330 TISVQQWNSYWGILGFPSAPTIDGIF 355


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 397 NPCLLNRSAKAQKNVRR*ST 456
           NPCL +R++    N+R+ S+
Sbjct: 105 NPCLPHRNSDRDLNIRKWSS 124


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 HHDMSSGFAVQRQAVDQ*SPHDDLLHNVRWARLG 256
           H+D ++   ++R+ ++Q + ++DL    R   LG
Sbjct: 244 HYDRNNNGNLEREELEQFAENEDLEELCRGCNLG 277



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 75  GKPSTSPKARH 43
           GKP+ SP +RH
Sbjct: 744 GKPTISPDSRH 754


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 539 TIQKSRWSPHGNKPGTPSAIFIDVIF 462
           TI   +W+ +    G PSA  ID IF
Sbjct: 330 TISVQQWNSYWGILGFPSAPTIDGIF 355


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 498 WYPLGHLHRRNI 463
           W  LGH  RRNI
Sbjct: 89  WVILGHSERRNI 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,185
Number of Sequences: 438
Number of extensions: 3340
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)