Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d09
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 159 2e-39
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 156 1e-38
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 155 2e-38
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 1e-06
11_06_0715 + 26552962-26553510,26553578-26555746 31 0.90
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 29 2.1
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 6.3
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 6.3
06_03_0265 - 18923597-18924367,18924459-18924704 28 6.3
09_04_0520 + 18286435-18287279,18287818-18288697 27 8.4
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 8.4
08_02_1092 + 24267737-24268641,24269005-24269884 27 8.4
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 8.4
05_03_0656 - 16676406-16676654 27 8.4
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 159 bits (385), Expect = 2e-39
Identities = 77/99 (77%), Positives = 86/99 (86%)
Frame = +3
Query: 213 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 392
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 393 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 509
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA
Sbjct: 60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRA 98
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 156 bits (379), Expect = 1e-38
Identities = 75/99 (75%), Positives = 84/99 (84%)
Frame = +3
Query: 213 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 392
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 393 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 509
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA
Sbjct: 61 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRA 99
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 155 bits (377), Expect = 2e-38
Identities = 75/96 (78%), Positives = 84/96 (87%)
Frame = +3
Query: 222 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 401
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 402 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 509
ADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA
Sbjct: 86 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRA 121
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 378 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 470
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 378 VTGGMKVKADRDEASPYAAMLAAQDVA 458
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 30.7 bits (66), Expect = 0.90
Identities = 28/128 (21%), Positives = 55/128 (42%)
Frame = +3
Query: 114 RRNVNDIFCGGYNED*LDFLRLQVLKMLFSG*AMAPRKNKVAKEEVQVTLGPQHLVGETV 293
R N++D+ GG ++ FL+ Q ++ + N + V + LV +
Sbjct: 239 RGNISDMDTGGLQDELKKFLKDQKYLIVLDDVWVPEAVNDLFGALVSNLSRSRVLVTTRI 298
Query: 294 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 473
GVAH+ +F D + + LS +E+ + D+D P M A+ + KC+
Sbjct: 299 DGVAHL--AFPDKRITLKPLSEQESW-ELFCRTAFPRDKDNECPAELMTLAKQIVSKCQG 355
Query: 474 LGITALHI 497
+ + + +
Sbjct: 356 IPLAIVSV 363
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 485 GLAHKAPCYWWKQNKDPWSWCSVCTSGSC 571
G H PC+ W + W WC SG C
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC 372
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 267 PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 398
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 498 LCARPLCQEFCISLLHPV 445
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 353 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 448
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPAE------VRLKCSVANT 336
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 307 CATPNTVSPTKCWGPR 260
C P+ V+PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 470 NSWHNGLAHKAPCYWWKQNKDPWSWC 547
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 307 CATPNTVSPTKCWGPR 260
C P+ V+PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -2
Query: 424 GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSPT 278
G SSR+ F+ PP R S P V + +S A + P VSPT
Sbjct: 860 GPDSSRNIFSAFPPAVRENQSIPSAPVAQSWISFG-ASSESKPTIVSPT 907
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 440 GGTGCSREMQNSWHNGLAHKAPCYWWKQNKD 532
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,800,057
Number of Sequences: 37544
Number of extensions: 317725
Number of successful extensions: 711
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -