Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d09
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   6.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   6.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   6.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 421 DASSRSAFTFMPPVTRAIVSRPDKSVT 341
           +A  R  FT+   + ++I+  PDK +T
Sbjct: 500 NADVRPPFTYASLIRQSIIESPDKQLT 526


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 90  NYFITNLTIITYFFKL 43
           NYFI ++ + TY+F L
Sbjct: 221 NYFIEDIGLNTYYFFL 236


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 288 TVFGVAHIFASFNDTFVHVTDLSGRETI 371
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 84  NNYMFKHIENRRNVNDIFCGGYNE 155
           NNY + +  N  N N+     YN+
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNNYNK 343


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 288 TVFGVAHIFASFNDTFVHVTDLSGRETI 371
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 422 TLRCYVGGTGCSREMQ 469
           T+RC+ GG   S E Q
Sbjct: 296 TVRCFTGGPRKSHESQ 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,532
Number of Sequences: 438
Number of extensions: 3439
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)