Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d06
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni... 139 2e-34
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc... 71 8e-14
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 41 7e-05
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 27 1.3
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 27 1.7
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 26 2.2
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 26 3.0
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.0
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr... 25 5.2
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 5.2
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 6.8
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 24 9.0
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 24 9.0
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 24 9.0
>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 139 bits (336), Expect = 2e-34
Identities = 65/115 (56%), Positives = 80/115 (69%), Gaps = 2/115 (1%)
Frame = +3
Query: 102 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGE--IMGYIM 275
MT R F D+ FNN+NLDPLTET+ +SFY YL WP V ES + +MGYIM
Sbjct: 1 MTDTRKFKATDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIM 60
Query: 276 GKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVS 440
GK+EG G+ WH HVTA+TV+P+ RRLGLA T+M+ LE V + A+FVDLFVR S
Sbjct: 61 GKSEGTGKEWHTHVTAITVAPNSRRLGLARTMMDYLETVGNSENAFFVDLFVRAS 115
>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 177
Score = 70.9 bits (166), Expect = 8e-14
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = +3
Query: 111 LRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEG 290
+RP D+ N NL L E Y L +Y + WP V P G ++GY++ K E
Sbjct: 3 IRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKMEE 62
Query: 291 HGENW--HGHVTALTVSPDYRRLGLAATLM-NLLEEVSEKKKAYFVDLFVRVS 440
++ HGH+T+++V YR LGLA LM + E A ++ L VR S
Sbjct: 63 EPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKS 115
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 41.1 bits (92), Expect = 7e-05
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = +3
Query: 102 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK 281
M T+ P++ + + + L+E Y Y ++ WPE F V + +G ++ K
Sbjct: 1 MVTIVPYSHQYLKDICQLIQKDLSEPYSKYVYRYFVHQWPE-FSFVALDNDRFIGAVICK 59
Query: 282 AEGH-GENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRV 437
+ H G G++ L + +YR G+A L +V + + A + L V
Sbjct: 60 QDVHRGTTLRGYIAMLAIVKEYRGQGIATKLTQASLDVMKNRGAQEIVLETEV 112
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 1.3
Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 168 LTETYGLSFYTQY-LAHWPE 224
+++ YG++FY+ Y L HW E
Sbjct: 246 MSQNYGIAFYSSYDLIHWTE 265
>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 324 LTVSPDYRRLGLAATLMNLLEEVSEKKKAY 413
LT+SP +LGL +++ LL V E+ K Y
Sbjct: 306 LTLSPQDLKLGLESSVNTLLAGVQEQLKQY 335
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 129 EDMLRFNNVNLDPLTETYGLSFYTQYLAH 215
ED L+ NN++ DP T + SF LAH
Sbjct: 222 EDFLKSNNISDDPYTSSVN-SFANDNLAH 249
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 3.0
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +3
Query: 138 LRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMG---YIMGKAEGHGENWH 308
L F+ +N T T P+Y + S I G ++ GKAE
Sbjct: 297 LPFSEINTQLSTSTTHALMVNILGTDDPDYVSKIAKRSLSIPGATLHLYGKAESRKGRKM 356
Query: 309 GHVTALTVSP 338
GHVT ++ SP
Sbjct: 357 GHVTIISDSP 366
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 439 LTLTNKSTKXAFFFSDTSSSKFINVAASPSLL*SGL 332
L + ++S FF SS F++ AASP+++ G+
Sbjct: 177 LEIRSESEFSKMFFEPKKSSSFVSRAASPAMVGPGV 212
>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +3
Query: 234 VVESPSGEIMGYIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKK 407
++++P G ++GY++ + G NW ++ + VS + L L + L +E S +K+
Sbjct: 222 MMQTPGGFLIGYLLSRLP--GTNWTTYMMYI-VSACLQGLLLMLCMFYLHKEKSRRKR 276
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 5.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 258 IMGYIMGKAEGHGEN 302
I+GY++G + HGEN
Sbjct: 2221 IVGYVLGLGDRHGEN 2235
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 6.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 255 EIMGYIMGKAEG 290
E+MGY+ GK EG
Sbjct: 56 EVMGYVQGKVEG 67
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 187 YRFTRNIWHIGQNIFKLWNHLVE 255
Y F ++ IGQ + LWN +E
Sbjct: 213 YGFVITLFEIGQTVPSLWNSTLE 235
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 264 GYIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLE 386
G++ G G GE HG + + VS LG+ A N LE
Sbjct: 37 GWVNGN--GLGEKQHGRIHNIKVSLKDDTLGIGAKATNDLE 75
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +3
Query: 300 NWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFV 431
N V L +S + GL + L ++ +K YF +FV
Sbjct: 113 NVSAQVATLCLSMNILGSGLGPMFLGPLSDIGGRKPVYFCSIFV 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,060
Number of Sequences: 5004
Number of extensions: 33261
Number of successful extensions: 89
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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