Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18d06
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401... 163 7e-41
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 75 2e-14
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 29 1.3
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 29 1.7
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284... 28 3.8
01_01_0485 - 3576989-3577173,3577476-3577795,3577895-3578178,357... 28 3.8
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 27 5.1
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 27 5.1
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 27 6.7
05_01_0491 + 4093952-4094145,4094336-4094642,4094700-4094799,409... 27 8.8
04_04_0537 + 26079926-26079994,26080317-26080500,26081866-260839... 27 8.8
>03_05_0805 -
27839576-27839667,27839763-27839823,27840082-27840151,
27841167-27841299,27841928-27842018,27842097-27842174
Length = 174
Score = 163 bits (395), Expect = 7e-41
Identities = 72/114 (63%), Positives = 90/114 (78%), Gaps = 1/114 (0%)
Frame = +3
Query: 102 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK 281
MTT+R F C+D+LRF++VNLD LTET+ +SFY Y+A WP+YF SP +MGYIMGK
Sbjct: 1 MTTIRRFCCDDLLRFSSVNLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGK 60
Query: 282 AEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEK-KKAYFVDLFVRVS 440
EG GE+WHGHVTA++V+ ++RR LA LMNLLEE+S+K KAYFVDLFVR S
Sbjct: 61 VEGQGESWHGHVTAVSVATEFRRQKLAKKLMNLLEEISDKMDKAYFVDLFVRAS 114
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 75.4 bits (177), Expect = 2e-14
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Frame = +3
Query: 102 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK 281
M +R T +D+L NL L E Y + +Y ++ WP+ V E G I+GY++ K
Sbjct: 1 MVCIRQATIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAK 60
Query: 282 -AEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKK-KAYFVDLFVRVS 440
E E HGH+T+L V +R+LGLA LM+ + ++ A +V L VR S
Sbjct: 61 MEEDPSEPCHGHITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRS 115
>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 156 NLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEGHGENWHG 311
++D + LS+ YL+ W ++ Q +E P + Y++G H +W G
Sbjct: 925 SIDMVIHIGDLSYANGYLSQWDQFTQQIE-PIASTVPYMIGSG-NHERDWPG 974
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 309 GHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYF 416
G++ L V+P +RR+GLA ++ +E E+ A +
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRMEAWFERMGAEY 140
>03_01_0366 -
2848449-2849032,2849155-2849233,2849346-2849608,
2849742-2849862
Length = 348
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 180 YGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEGHGENWHGH 314
+G Y Q P Y+Q +G+ +GY A G G +H H
Sbjct: 264 HGYFAYPQQQGPPPSYYQYYGGGNGDGVGYANPNAGGAGGYYHPH 308
>01_01_0485 -
3576989-3577173,3577476-3577795,3577895-3578178,
3579780-3580095,3580441-3580859
Length = 507
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 213 HWPEYFQVVESPSGEIMGYIMGKAEGH 293
+WP+Y + + S +IM + + K+ GH
Sbjct: 308 YWPQYTPITKRASHDIMLFTVSKSTGH 334
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 178 HMAYRFTRNIWHIGQNIFKLWNH 246
H+ Y+F RN IG+ I ++WNH
Sbjct: 550 HIIYQFERN-GAIGECIIRVWNH 571
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 324 LTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVS 440
L VSP +RRLG+A L+ EE + A + + S
Sbjct: 127 LRVSPSHRRLGIATELVRRAEEWCAARGAAYATMATTAS 165
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 267 YIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMN 377
Y+M K ++ HG V + + P + R G+ T+MN
Sbjct: 485 YLMLKGNSTPKDGHGAVDNMKIIPAHDRQGMFKTIMN 521
>05_01_0491 +
4093952-4094145,4094336-4094642,4094700-4094799,
4094823-4094953,4095546-4095823,4095909-4096225,
4096322-4096506
Length = 503
Score = 26.6 bits (56), Expect = 8.8
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +3
Query: 213 HWPEYFQVVESPSGEIMGYIMGKAEGH 293
+WP+Y + + + +IM + + K GH
Sbjct: 305 YWPQYTPITSAAAHDIMLFTVSKCTGH 331
>04_04_0537 +
26079926-26079994,26080317-26080500,26081866-26083910,
26084323-26084424,26084566-26084622
Length = 818
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +3
Query: 162 DPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEGHGENWHGHVTALTVSPD 341
D T+ Y + + L+ P +S ++ I +G + W+G+V D
Sbjct: 621 DKCTDYYQVPLEKEILSS-PGNCDRQDSEENYLLAEISTGKDGVSDAWNGNVEQSLQQQD 679
Query: 342 YRRLGLAATLMNL 380
+R+L + T +NL
Sbjct: 680 HRKLHVGDTALNL 692
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,253
Number of Sequences: 37544
Number of extensions: 192257
Number of successful extensions: 443
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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