Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18d06
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical ...   169   8e-43
AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical...    79   1e-15
Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical pr...    30   0.65 
U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.3 protein.
          Length = 173

 Score =  169 bits (411), Expect = 8e-43
 Identities = 75/113 (66%), Positives = 89/113 (78%)
 Frame = +3

Query: 102 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK 281
           MTTLRPF   DM +FNNVNLD  TETYG  FY  Y+ ++PEY+QV E P+GEIM Y+MGK
Sbjct: 1   MTTLRPFDVMDMFKFNNVNLDINTETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGK 60

Query: 282 AEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVS 440
            EG   NWHGHVTAL+V+P++RRLGLAA +M  LE  SE ++AYFVDLFVRVS
Sbjct: 61  IEGRDTNWHGHVTALSVAPNFRRLGLAAYMMEFLERTSEARRAYFVDLFVRVS 113


>AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical
           protein K07H8.3 protein.
          Length = 182

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
 Frame = +3

Query: 129 EDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK-AEGHGENW 305
           +D++   N NL  L E Y + +Y  +   WP+   + E   G ++GY++ K  E  GE  
Sbjct: 9   DDLMSMQNANLMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKMEEDPGEEP 68

Query: 306 HGHVTALTVSPDYRRLGLAATLMN-LLEEVSEKKKAYFVDLFVRVS 440
           HGH+T+L V   YRRLGLA  +M+     + E   A +V L VRVS
Sbjct: 69  HGHITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVS 114


>Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical
           protein D2023.4 protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 312 HVTALTVSPDYRRLGLAATLMNLLEEVSEKK 404
           H+  L + P +RR+GLA TL   L E++  K
Sbjct: 80  HMEDLYIRPQFRRMGLARTLWKKLAELARDK 110


>U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical
           protein T12E12.3 protein.
          Length = 818

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 255 EIMGYIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVD 422
           ++MG  + KA G+ ENW     A TV+ D     +      +  EV  ++K   V+
Sbjct: 729 DLMGSALEKAFGNQENWTDKSAAKTVTSDAITNAIETKFTGISREVLLEQKERLVE 784


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 195 YTQYLAHWPEYFQVVESPSGEIMGYIM 275
           Y+ YL HWP Y  V      ++  Y++
Sbjct: 320 YSLYLVHWPIYVYVKHYYENQLAAYLL 346


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 108 TLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMG--YIMGK 281
           T+  FT  + L F  VN D  T         +     P Y Q +   +GEI G  YI+G 
Sbjct: 119 TMFGFTSSNSLYFLRVNNDDCT-VVSHKVTVEGTLPIPLYGQAI--CAGEIPGKYYIIGG 175

Query: 282 AEGHGENWHGHVTALTVSPD 341
            EG   N+  H   + V+P+
Sbjct: 176 TEGVRFNFDVHSLTMKVNPE 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,217,136
Number of Sequences: 27780
Number of extensions: 181562
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)