Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c23
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   2.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   5.1  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    24   6.7  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    24   6.7  
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    23   8.8  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    23   8.8  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   8.8  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      23   8.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    23   8.8  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 257 IGKSYKSSGFRSTMGIRVLGPGWYPEDPAFIVLTRSAASLVRAWTVAVC 111
           IGK+  S    S + I +LG  + P D    V   +A+SL+++ +V  C
Sbjct: 707 IGKNAASKD--SQIAIGILGERYLPADEPSSVKANNASSLLQSSSVIKC 753


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 41  PSNTGTPSIIIGTLPSFSLISSQ 109
           PSN GT S++ G + S   ISS+
Sbjct: 601 PSNVGTFSMVRGAINSLQNISSE 623


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 28  NANWAIQHRDTINYYRDAAKLLTDKLTGQTATV 126
           N+ +A+      N+  D  KLL  K+TG  A++
Sbjct: 184 NSGFALAPIACYNHTSDLRKLLKHKVTGSNASI 216


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 210 YPHGRSKPGRLIRLTYYPKTNFHNNPQKD 296
           Y +G    G L++L ++   NF + P KD
Sbjct: 579 YRYGSDLRGILMQLNFWSLVNFPSLPSKD 607


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 228 KPGRLIRLTYYPKTNFHNNPQKDNYCYFL 314
           +P R+  LT     N HN P+     Y+L
Sbjct: 4   RPARISDLTGMQNCNLHNLPENYQLKYYL 32


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 302 VIVLLGIIMEISLGIIGK--SYKSSGFRS 222
           VI+++ ++ME ++ I+G   S  S  F+S
Sbjct: 313 VILVMAVVMETTINIVGNNDSIPSQNFKS 341


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 237 RLIRLTYY-PKTNFHNNPQK 293
           R I++ +Y P   FHN P+K
Sbjct: 305 RFIKIFWYNPSKGFHNRPKK 324


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 74  GTLPSFSLISSQDRLLQSKPLPMKPLI*LEQ*MQDPLDTTQGL 202
           GTL S+++       LQ +  P+ P + +   +QD    T GL
Sbjct: 212 GTLTSYTISCMVINFLQKRDPPILPSLQMLPHLQDSSTMTDGL 254


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 16   DGILNANWAIQHRDTINYYRDAAKLLTDKLTGQTATVQALTNEAADLV 159
            DG+    +A +  D   Y   + KL+ D      +  Q L +EAADL+
Sbjct: 1019 DGLRTLMYAHRFIDESEY--QSWKLVNDAALNSLSNRQQLLDEAADLI 1064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,680
Number of Sequences: 5004
Number of extensions: 24362
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)