Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18c23
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 30 0.49
06_03_0669 + 23321168-23321438,23321517-23321740,23321847-233220... 29 1.1
09_01_0048 + 833872-834122,834255-834314,834818-835112,835775-83... 28 2.0
11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242 27 2.6
11_06_0616 + 25546175-25546359,25546778-25546837,25546939-255469... 27 3.5
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 27 3.5
02_05_0866 - 32331629-32334328 27 3.5
04_04_0003 - 22086317-22086805 27 4.6
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062... 27 4.6
08_02_0960 + 23058393-23059739 26 6.1
04_01_0120 + 1241241-1241321,1242827-1242857,1242999-1243612,124... 26 6.1
08_02_0959 - 23055078-23055177,23055408-23055985 26 8.0
01_05_0415 - 21940466-21941536 26 8.0
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 29.9 bits (64), Expect = 0.49
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 210 YPHGRSKPGRLIRLTYYPKTNFHNNPQKD 296
YP RS+ ++R+ YP+ F + P++D
Sbjct: 838 YPDSRSRQEEIVRIERYPEPRFAHEPRQD 866
>06_03_0669 +
23321168-23321438,23321517-23321740,23321847-23322094,
23322193-23322595,23322698-23323165
Length = 537
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 209 RVLGPGWYPEDPAFIV--LTRSAASLVRAWTVAVC 111
RVL PG+YP++ +V + RS A+L W C
Sbjct: 153 RVLTPGFYPDNLNRLVPHVGRSVAALAERWRAMAC 187
>09_01_0048 +
833872-834122,834255-834314,834818-835112,835775-835894
Length = 241
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 129 LDCSSLSCELISEKLGSVPIIIDGVPVLDGPVGIQDSIIF 10
LD + + +LI+ +G IID VP++ +G+ D F
Sbjct: 118 LDANIPNADLIASAIGVASAIIDNVPLVAATMGMYDLTSF 157
>11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242
Length = 544
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +1
Query: 4 SQKDDGILNANWAIQHRDTINYYRDAAKLLTDKLTGQTATVQALTN 141
+ + D ++ NWA+ DT Y + +++DK V + N
Sbjct: 152 NHQQDALVRDNWALFFSDTYRYQKMLTSIISDKKERNFKRVMEVAN 197
>11_06_0616 +
25546175-25546359,25546778-25546837,25546939-25546957,
25547948-25547998,25548097-25548230,25548558-25548948,
25549840-25549890
Length = 296
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 278 MEISLGIIGKSYKSSGFRSTMGIRVLGPGWYPEDPAFI 165
M++ LG+ G SS F G P PEDP+ +
Sbjct: 110 MKLPLGLTGDPNTSSWFHGGGGAEAQQPMMLPEDPSLL 147
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 213 PHGRSKPGRLIRLTYYPKTNFHNNPQKDNYCYFLL 317
P + + RL+ YY K ++N Q +YC +L
Sbjct: 479 PEDKEEASRLLPFKYYLKDGYNNLSQNLSYCIEIL 513
>02_05_0866 - 32331629-32334328
Length = 899
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = -3
Query: 222 YHGDKGTRPWVV-SRGSCIH--CSN*ISGFIGKGLDCSSLSCELISEKLGSV 76
Y+ ++ +RP +V S GS CS S +G D SSLSC L+ ++GS+
Sbjct: 357 YYANRFSRPDMVGSNGSSCQALCSGNCS-CLGYFYDESSLSCFLVQHQIGSL 407
>04_04_0003 - 22086317-22086805
Length = 162
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -1
Query: 308 ITVIVLLGIIMEISLGIIGKSYKSSGFRST 219
+T + + G + +SLG I KS+ ++GF+S+
Sbjct: 117 VTAVEVAGGEVTVSLGPIKKSFPAAGFKSS 146
>02_05_0530 -
29804939-29805547,29805658-29805885,29805978-29806261,
29807095-29807199,29807648-29808155
Length = 577
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 13 DDGILNAN-WAIQHRDT---INYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGS 180
+D + AN W + + + I++ + L K++G+TA+ + ADL NA
Sbjct: 266 EDTLARANAWILSSQSSGVPISFLNVQTEALLTKISGETASATVNSGSLADLPNLANASL 325
Query: 181 SGY 189
G+
Sbjct: 326 YGF 328
>08_02_0960 + 23058393-23059739
Length = 448
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 35 TGPSNTGTPSIIIGTLPSFSLISSQDRLLQSKPLPMKPLI 154
+G TP ++ LPS +S + L K LP+ PL+
Sbjct: 270 SGSPVQSTPLVVNAALPSLYFMSLKGISLGQKRLPIDPLV 309
>04_01_0120 +
1241241-1241321,1242827-1242857,1242999-1243612,
1243726-1243796,1244233-1244478,1245267-1245393,
1245993-1246185,1246656-1247209
Length = 638
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = -3
Query: 132 GLDCSSLSCELISEKLGSVPIIIDGVPVL-----DGPV 34
G+D SLS E LG++ ++ G+PV+ DGPV
Sbjct: 169 GVDVLSLSLGSPLEDLGTLHVVAKGIPVVYSAGNDGPV 206
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 56 TPSIIIGTLPSFSLISSQDRLLQSKPLPMKPLI 154
TP ++ LPS +S + L K LP+ PL+
Sbjct: 58 TPLVVNAALPSLYFMSLKGISLGQKRLPIDPLV 90
>01_05_0415 - 21940466-21941536
Length = 356
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 55 DTINYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTL 210
+T + Y++ L D ++G A + L ADL PGP L
Sbjct: 278 ETYDGYKEEDALAVDPVSGAQAGIGVLGGSGADLQENTGILLGADEPGPGEL 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,824,066
Number of Sequences: 37544
Number of extensions: 167447
Number of successful extensions: 414
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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