Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c23
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   3.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   6.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   8.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   8.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   8.8  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 261 PKTNFHNNPQKDNYCY 308
           PK   +NNP  +NY Y
Sbjct: 79  PKIISNNNPLSNNYNY 94


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 308 ITVIVLLGIIMEISLGIIGKSYKSSGFR 225
           + ++V +GII  I L II  +YK    R
Sbjct: 826 VFIVVGVGIIGGIGLIIIEVAYKKHQIR 853


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 222 RSKPGRLIRLTYYPKTNFHNNPQKDNYCYFLL 317
           RSK  ++I    Y   N++NN       Y ++
Sbjct: 297 RSKETKIISSNNYNYKNYNNNYNSKKLYYNII 328


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 222 RSKPGRLIRLTYYPKTNFHNNPQKDNYCYFLL 317
           RSK  ++I    Y   N++NN       Y ++
Sbjct: 308 RSKETKIISSNNYNYKNYNNNYNSKKLYYNII 339


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 308 ITVIVLLGIIMEISLGIIGKSYKSSGFR 225
           I ++ L+GII  + L    K+ +  G+R
Sbjct: 204 IAIVELIGIICALCLANSIKNAERRGYR 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,949
Number of Sequences: 438
Number of extensions: 1929
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)