Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c18
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0953 + 12684695-12684818,12684910-12685517                       29   3.8  
03_01_0584 - 4325907-4326190,4326638-4327060,4327218-4327449           29   3.8  
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694...    28   6.6  
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475...    27   8.7  

>03_02_0953 + 12684695-12684818,12684910-12685517
          Length = 243

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 428 RRDGVGSRKQIYYGTRRRMGGRWRCD--DDARVSR 330
           RR   G R+ +Y G RRR  G+W  +  D A+ +R
Sbjct: 56  RRQRRGERRTLYRGIRRRPWGKWAAEIRDPAKGAR 90


>03_01_0584 - 4325907-4326190,4326638-4327060,4327218-4327449
          Length = 312

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 485 FASSISVSAHVDQLFGRLRRRDGVGSRKQIYYGTRRRMGGRWRCD-DDARVSRRV-LRRY 312
           F+S +S S+   +            S+K  Y G RRR  GR+  +  D +  RRV L  Y
Sbjct: 78  FSSDVSSSSRPRRRVAAAAAGRRKASKKSKYRGVRRRPSGRFAAEIRDPKKGRRVWLGTY 137

Query: 311 GS 306
           GS
Sbjct: 138 GS 139


>01_06_1604 +
           38567374-38567391,38567505-38567636,38569377-38569445,
           38569545-38569775,38570883-38571013,38571471-38571629,
           38573078-38573366
          Length = 342

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 141 KLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNT 290
           K RLK++ P    I      ++ D   +  +N + L++ + HV    +NT
Sbjct: 145 KTRLKLESPRSWRISIDEVAVVADSDGDADVNAEQLLHLLEHVGAIGENT 194


>03_04_0153 +
           17745473-17745889,17746120-17746272,17747307-17747512,
           17747752-17747959
          Length = 327

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 584 ILFRSQQKYHGHDHVADFVFCRTGA 510
           +LFR++ +  GH HVA F    +GA
Sbjct: 48  LLFRARARRRGHGHVARFAASASGA 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,815
Number of Sequences: 37544
Number of extensions: 239116
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)