Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18c17
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical p... 29 3.0
Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical p... 29 3.0
AF067944-1|AAC17672.1| 237|Caenorhabditis elegans Hypothetical ... 29 3.0
Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical pr... 29 4.0
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 5.3
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 28 7.0
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 9.3
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 27 9.3
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 27 9.3
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 27 9.3
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
F36H2.3 protein.
Length = 1388
Score = 31.9 bits (69), Expect = 0.43
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -2
Query: 533 STMTLGCSVTSGTLRSR*SMAAATLASPTARGADTYGAAVVAARTTPASAVDRA--HSRS 360
+T TL C ++ S S + + +PT + G T P + V +S
Sbjct: 1213 TTATLTCLNSATLTGSSYSSCSNGVWTPTLGSCTSSGTGTGPCYTPPLTPVGATLTYSSG 1272
Query: 359 EWAPLTFE*IAP-TCPTAASTVGIAIAFCTD--WS--CGNVVGAELTSVAISET 213
+AP T A +CP + +G +I++CT+ WS G+ G+ + + + T
Sbjct: 1273 YFAPWTAGSTATMSCPAGQTVIGTSISYCTNSAWSPALGSCSGSSVGQASTTTT 1326
>Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical
protein R07H5.2a protein.
Length = 646
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 263 SSNLCRRQWXXXXXXXXXGRSEQFIQKSKVPT-HFSNGLYR 382
SSNLCR G Q+++KS++P+ HF L R
Sbjct: 4 SSNLCRSITASRGKHALTGDDYQYLEKSEIPSYHFQKSLRR 44
>Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical
protein R07H5.2a protein.
Length = 646
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 263 SSNLCRRQWXXXXXXXXXGRSEQFIQKSKVPT-HFSNGLYR 382
SSNLCR G Q+++KS++P+ HF L R
Sbjct: 4 SSNLCRSITASRGKHALTGDDYQYLEKSEIPSYHFQKSLRR 44
>AF067944-1|AAC17672.1| 237|Caenorhabditis elegans Hypothetical
protein K10C9.4 protein.
Length = 237
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 151 YSFLLNSKVKILIVFFEDVNRVSEMATEVSSAPTTLPQLQSVQKAMAIPTV 303
Y F+LN + ILI+FF + + + +VSS + Q S+ + + + +
Sbjct: 107 YIFILNILILILILFFTIIISANRIIAKVSSDLSNRNQFSSIYRLLFVQCI 157
>Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical
protein F58A4.7c protein.
Length = 428
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Frame = +1
Query: 247 PTTLPQLQS-VQKAMAIPTVEAAVGQVG-AIYSKVKGAHSLLEWALSTAEAGVVLAATTA 420
P TLP L++ V + +P + + + S + A + A+ T + + TA
Sbjct: 301 PPTLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIFSTAVPTQSS---ILFQTA 357
Query: 421 APYVSAPLAVGDAKVAAAIDHLERRVPLVTEQPKVIVETTKQAVLSKI 564
A V++ ++ G++ A HL+ QP + + + Q ++ I
Sbjct: 358 AAAVTSAMSTGNSTPVALPHHLQGHNSAFVTQPSLTLSQSMQTIVEAI 405
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = +1
Query: 226 ATEVSSAPTTLPQLQSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWALSTAEAGVVL 405
+T +SAP T L A T A G ++ GA S A + G+
Sbjct: 410 STTTTSAPAT-GSLFGTAPATTTATSAAPAASTGGLF----GASSTTTPASTAPTGGLFG 464
Query: 406 AATTAAPYVSAP 441
AATT AP +AP
Sbjct: 465 AATTTAPAAAAP 476
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -2
Query: 458 ASPTARGADTYGAAVVAARTTPASAVDRAHSRSEWAPLTFE*IAPTCPTAAST 300
AS +A T TP+SA R+ SRS P ++ + P+A+ST
Sbjct: 61 ASKSATRGRTASKTPKTPSKTPSSASARSRSRSRGRPTNASRLSASTPSASST 113
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = -2
Query: 533 STMTLGCSVTSGTLRSR*SMAAATLASPTARGADTYGAAVVAARTTPASA 384
ST+T+G S TSG S S ++ T++G+ G+ VV++ +PA++
Sbjct: 1715 STVTMGSSSTSGVSTS--SASSGQPQMSTSQGSSA-GSTVVSSTASPAAS 1761
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 27.5 bits (58), Expect = 9.3
Identities = 32/118 (27%), Positives = 46/118 (38%)
Frame = +1
Query: 217 SEMATEVSSAPTTLPQLQSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWALSTAEAG 396
+E+ +SAP P ++VQ A PT V V A + E S E
Sbjct: 268 TEIVAVATSAPAPAPTYENVQPAPVAPTTTVEETHVEEPAPAVPEATVVEE---SHFEEP 324
Query: 397 VVLAATTAAPYVSAPLAVGDAKVAAAIDHLERRVPLVTEQPKVIVETTKQAVLSKISP 570
A T+AP+V V + + +E P V E P+V VE Q + + P
Sbjct: 325 APAPAATSAPFVEPVTEVNTEEYEEEV--VEPAEPQVVE-PQV-VEPVPQPHVEPVQP 378
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 27.5 bits (58), Expect = 9.3
Identities = 32/118 (27%), Positives = 46/118 (38%)
Frame = +1
Query: 217 SEMATEVSSAPTTLPQLQSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWALSTAEAG 396
+E+ +SAP P ++VQ A PT V V A + E S E
Sbjct: 268 TEIVAVATSAPAPAPTYENVQPAPVAPTTTVEETHVEEPAPAVPEATVVEE---SHFEEP 324
Query: 397 VVLAATTAAPYVSAPLAVGDAKVAAAIDHLERRVPLVTEQPKVIVETTKQAVLSKISP 570
A T+AP+V V + + +E P V E P+V VE Q + + P
Sbjct: 325 APAPAATSAPFVEPVTEVNTEEYEEEV--VEPAEPQVVE-PQV-VEPVPQPHVEPVQP 378
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 464 TLASPTARGADTYGAAVVAARTTPASAVDRAHSRSEWAPL--TFE*IAPTCPTAAST 300
TL +PT T + TTP + V A + + AP+ T +APT PT T
Sbjct: 574 TLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTTSPTLAPTSPTKLPT 630
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 464 TLASPTARGADTYGAAVVAARTTPASAVDRAHSRSEWAPL--TFE*IAPTCPTAAST 300
TL +PT T + TTP + V A + + AP+ T +APT PT T
Sbjct: 630 TLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTTSPTLAPTSPTKLPT 686
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,892,947
Number of Sequences: 27780
Number of extensions: 259774
Number of successful extensions: 764
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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