Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c14
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    29   0.64 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.5  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.5  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   4.5  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   6.0  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   7.9  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.9  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = +2

Query: 443 DEQAMTVRVEPMVTIGDITEYLIPKGYSLAVTIELVDAT-LGGLAFGTGMSTHSHKAGLY 619
           DE +  + ++  V + +   +L  KGY   + +    +  +GG A          + G  
Sbjct: 157 DEISGVITLDSGVILENADNFLAEKGYMFPLDLGAKGSCQVGGCAATAAGGLRLLRYGSL 216

Query: 620 HETITAYEVVLGDG----SLVTATADNEHSDL 703
           H +I   E VL DG    +LVT   DN   D+
Sbjct: 217 HGSILGMEAVLPDGTILDNLVTLRKDNTGLDI 248


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 186 QNSATTNSRLFSNQLISLAFKCTIL--TSLYYNYF 88
           Q ++TTN+ +FSN  IS+  K  IL  T L +  F
Sbjct: 889 QFTSTTNANMFSNNSISVLLKAAILKPTKLTHGMF 923


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 294 LGSRNGTSFRHETVDCCARRDPTGCLSLLRFSKNISIIEFLYRF 425
           LG ++  S +H  +     +DP   ++LL+F    S+I F   F
Sbjct: 107 LGEKHCKSIQH--IRLLKTKDPNRIMALLKFKDQASVIRFYTEF 148


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 404 HRVPIPLYDILEL----DEQAMTVRVEPMVTIGDITEYLIPKGYS 526
           HRVP+ L  I  +    D +   V +EP +       YLI + YS
Sbjct: 260 HRVPVWLSSITHMLFLDDPRTQRVLLEPRIDNSKFINYLIEENYS 304


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 614 LYHETITAYEVVLGDGSLV 670
           L +ETI  Y V++GDGS V
Sbjct: 34  LPNETINQYHVIVGDGSRV 52


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 231 ARSCSATVNRKLAGRQNSATTNSRLFSNQLISLAFKC 121
           +RS ++ + R +  R      NSR+  N+L+ + FKC
Sbjct: 168 SRSTTSFI-RNVKPRTGEGLKNSRIPRNELLDILFKC 203


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 570 LHSALECPLTPTKRACTTRLLLRMKWFSV 656
           L S + C  TPT++A  TRL+   K  SV
Sbjct: 737 LSSVVICRCTPTQKANMTRLIQEKKQASV 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,653
Number of Sequences: 5004
Number of extensions: 60090
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)