Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18c14
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0098 - 12844631-12845074,12845329-12846570 110 9e-25
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 30 1.5
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 29 2.7
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498... 29 4.7
05_04_0094 + 17888998-17889589,17889668-17889795,17889879-178901... 29 4.7
10_08_0414 + 17755427-17756000,17756181-17756308,17756434-177566... 28 6.2
01_07_0066 - 40855497-40855967,40856051-40856195,40856303-40856607 28 6.2
05_05_0190 - 23110152-23112137 28 8.3
>10_07_0098 - 12844631-12845074,12845329-12846570
Length = 561
Score = 110 bits (265), Expect = 9e-25
Identities = 69/198 (34%), Positives = 107/198 (54%), Gaps = 6/198 (3%)
Frame = +2
Query: 128 KARLISWLENNRELVVALFCLPASFL--FTVXXXXXXXXXXXXXXXD-QHERAVKEIQAR 298
K L+ +L R ++V LP S L F + +H+ V+++ R
Sbjct: 14 KKVLVDYLVKFRWILVIFVVLPISALIYFNIYLGDVWSAMKSEKRRQKEHDDNVQKVVKR 73
Query: 299 VQEWNKLPSRDRRLLCTSRPNWLSLS--TTFFEKHLHHRVPIPLY-DILELDEQAMTVRV 469
+++ N P +D L+CT+R W+++ +++ H V + + +ILE+D + M +V
Sbjct: 74 LKQRN--PKKDG-LVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILEIDRERMVAKV 130
Query: 470 EPMVTIGDITEYLIPKGYSLAVTIELVDATLGGLAFGTGMSTHSHKAGLYHETITAYEVV 649
EP+V +G IT P +LAV EL D T+GGL G G+ SH GL+ +T+ A EVV
Sbjct: 131 EPLVNMGQITRATCPMNLALAVVAELDDLTVGGLINGYGIEGSSHLYGLFSDTVVAVEVV 190
Query: 650 LGDGSLVTATADNEHSDL 703
L DG +V AT DNE+SDL
Sbjct: 191 LADGRVVRATKDNEYSDL 208
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -2
Query: 255 RATSLRKCARSCSATVNRKLAGRQNSATTNSR 160
++ +L+ C +S SA V R +GR+N A++NS+
Sbjct: 373 KSAALKSCQKSSSA-VGRNTSGRRNKASSNSK 403
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 384 NVVERDNQLGLDVHSSRRSRDGSLFHSWTLA 292
++ E +NQLG+D H+S+ G+ H TL+
Sbjct: 854 DIDENNNQLGIDEHTSQPGSGGNKIHGPTLS 884
>05_06_0120 +
25748882-25749297,25749411-25749600,25749682-25749888,
25750234-25750401,25751155-25751390,25751617-25751764
Length = 454
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 527 LAVTIELVDATLGGLAFGTGMSTHSHKAGL 616
+AV + LV + LGG A G G H H GL
Sbjct: 17 VAVAVLLVTSGLGGAAAGGGGRRHGHTKGL 46
>05_04_0094 +
17888998-17889589,17889668-17889795,17889879-17890139,
17890241-17890503,17890588-17890909
Length = 521
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 557 TLGGLAFGTGMSTHSHKAGLYHETITAYEVVLGDGSLVTATADNEHSDL 703
T+GG G+S + + G + E+V G G ++T + + ++SDL
Sbjct: 166 TVGGTLSNAGVSGQTFRHGPQISNVNELEIVTGRGDVITCSPE-QNSDL 213
>10_08_0414 +
17755427-17756000,17756181-17756308,17756434-17756694,
17756774-17757036,17758662-17759019
Length = 527
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 557 TLGGLAFGTGMSTHSHKAGLYHETITAYEVVLGDGSLVTAT 679
T+GG G+S + K G + EVV G G +VT +
Sbjct: 160 TIGGTLSNAGISGQTFKHGPQISNVLQLEVVTGRGEIVTCS 200
>01_07_0066 - 40855497-40855967,40856051-40856195,40856303-40856607
Length = 306
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 465 ESSQW*PSATSQNTSYRRAIHWPSLLNWLTLHLEVLHSALECPLTPTKRACTTRLL 632
+S W + + N + R AIH PSLLN + +V+ + ++ +P C T ++
Sbjct: 73 DSKDWIRACDALNDARRLAIHHPSLLN--PILGKVMLAIVKTMKSPRSAVCKTSIM 126
>05_05_0190 - 23110152-23112137
Length = 661
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 690 SLSAVAVTRDPSPRTTSYAVIVSWYKPALWE*VDIPVPNARPPSVA 553
++ A DP T+S AV ++W L + +DI R PS+A
Sbjct: 463 AVGGAAAAVDPDRPTSSLAVHIAWIMDVLHKNLDIKSKIYRDPSLA 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,867,202
Number of Sequences: 37544
Number of extensions: 429242
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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