Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c10
         (272 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   0.52 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   0.91 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   2.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   8.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   8.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   8.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 0.52
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 28  KNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSD 132
           K  ++    Q+  +T+  +Y  DN   ++I  N+D
Sbjct: 184 KGELVSLTVQAMDSTNTMVYMVDNKNTLIIYQNAD 218


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 0.91
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 267 FLIFIVFNQFVRWRR 223
           + IF+ FN  VR+RR
Sbjct: 21  YFIFLYFNSLVRFRR 35


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 28  KNGIMKTDAQSTSNTHNFMYSPDNNLEVV 114
           +NGI   D  +  N + F+   +NN  +V
Sbjct: 318 RNGIACWDTNTELNPNTFILVAENNTTMV 346


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 102 SGGGHHYQFGRR 137
           SGG +H+  GRR
Sbjct: 264 SGGTNHWDSGRR 275


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 94  DNNLEVVIITNSDGDHDGYLE 156
           D N EV + T +   H G +E
Sbjct: 122 DGNFEVTLATKATIYHQGLVE 142


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 261 IFIVFNQF 238
           IF++FNQF
Sbjct: 182 IFLIFNQF 189


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 261 IFIVFNQF 238
           IF++FNQF
Sbjct: 182 IFLIFNQF 189


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 261 IFIVFNQF 238
           IF++FNQF
Sbjct: 182 IFLIFNQF 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,539
Number of Sequences: 438
Number of extensions: 1627
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)