Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c08
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   2.2  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   2.2  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   5.0  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    24   6.7  

>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 225 WSDLYDRLTSISLT 184
           W DLY RLT ++LT
Sbjct: 358 WEDLYKRLTGVTLT 371


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 368 FFKPSH-FPLIKISFRYINIQYFNLLLITDNYYKPT*ESEIIFTSCI 231
           ++ PS  +PL K SF+YI   Y   LL  ++ +K    +E +F S +
Sbjct: 305 YYCPSMIYPLSKSSFQYIIFHYAAGLLFINSDFKIISLNEALFESML 351


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 329 FRYINIQYFNLLLITDNYYKPT*ESEIIFTSCIHHGPTFMI 207
           F Y        L +TD ++    +  + F  C HHG T ++
Sbjct: 115 FLYYCAYISKFLELTDTFFLVLRKKPLQFLHCYHHGATAVL 155


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 124 YCLNCTIPSKKCSNSP 77
           +CLNCT  +++C   P
Sbjct: 52  FCLNCTKTNRECEGYP 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,054
Number of Sequences: 5004
Number of extensions: 22290
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)