Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c04
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   0.72 
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    26   0.95 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   0.95 
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    24   3.8  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    24   5.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   8.8  

>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 0.72
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 111 NKHMHRTMVVFNVIITNINEISHTDNTFLI 22
           N  +  T++ F +I   IN ISHT+N+ ++
Sbjct: 404 NYGLQGTIIFFQMITQQINIISHTNNSDVV 433


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 47  DISFIFVIITLNTTIVLCMCLLKVFV 124
           +++ +F+ I L   IVL +CLL V +
Sbjct: 20  NLAILFIFIALAAVIVLLICLLSVIL 45


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 58  YICDNNV-KYNHCSVHVFIKGFCAIL 132
           Y C+ N+ K N+C VH+   G C +L
Sbjct: 885 YDCEGNILKGNYCLVHLQSLGECGVL 910


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 272 HPTTSVMTNQTVVSLNK*SLFNKEHFFVMKFQLMI 168
           H T +V+    VV L   SLF K H  +  + L I
Sbjct: 206 HLTNNVLRAMKVVELPDISLFPKSHVVIFHYYLGI 240


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 114 FNKHMHRTMVVFNVIITNINEISHTDNTFL 25
           +NK + R +   NV++   NE SH    FL
Sbjct: 809 YNKRLARHLEDGNVVLITCNEDSHIWTNFL 838


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 116  VFVQYYIX*TCKKNHLXQSSVGISLRKNVP 205
            + VQY+       NH+ QS  G   R+ +P
Sbjct: 921  IHVQYWSDLGGSANHMQQSDYGFKYRRFLP 950


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,128,983
Number of Sequences: 5004
Number of extensions: 18490
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)