Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c04
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0082 + 26279699-26279996,26280100-26280315,26280438-262808...    27   3.2  
04_03_0923 + 20843477-20845044,20846081-20846996                       26   4.2  
07_03_0284 + 16249497-16249993,16250950-16251069,16251166-162512...    25   7.4  
03_06_0678 - 35480711-35484658                                         25   7.4  
04_04_0839 - 28565732-28565908,28566380-28566544,28566656-285667...    25   9.8  
02_05_0285 - 27498946-27499122,27499944-27500108,27500828-275009...    25   9.8  

>01_06_0082 +
           26279699-26279996,26280100-26280315,26280438-26280863,
           26280966-26281168
          Length = 380

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 11  GARTIRKVLSVCDISFIFV---IITLNTTIVLCMCLLKVF 121
           G R +    S    SFI +   ++ LNT + LC C  ++F
Sbjct: 10  GRRAVSPSSSAAAASFILLLCAVVLLNTHVALCGCYKRIF 49


>04_03_0923 + 20843477-20845044,20846081-20846996
          Length = 827

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 49  YFVYICDNNVKYNHCSVHVFIKGFCA 126
           YF+Y  DN     H  + VF +G  A
Sbjct: 249 YFIYTWDNETAIMHAGIDVFGRGLVA 274


>07_03_0284 +
           16249497-16249993,16250950-16251069,16251166-16251298,
           16251867-16252031,16253289-16253459
          Length = 361

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 176 VGISLRKNVPC*IVIIYSVIQQFGSS 253
           +GI++   +PC I I+Y+V  Q G+S
Sbjct: 229 IGIAVCCCLPCIIAILYAVTDQEGAS 254


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 47  DISFIFVIITLNTTIVLCMCLLKVFVQY 130
           DIS ++ + TLN +I  C+C L   ++Y
Sbjct: 614 DISILYHLQTLNLSICDCLCQLPNGMKY 641


>04_04_0839 -
           28565732-28565908,28566380-28566544,28566656-28566788,
           28566888-28567007,28568361-28568740
          Length = 324

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 176 VGISLRKNVPC*IVIIYSVIQQFGSS 253
           +GI++   +PC I I+Y+V  Q G+S
Sbjct: 190 IGIAVCCCLPCIIAILYAVSDQEGAS 215


>02_05_0285 -
           27498946-27499122,27499944-27500108,27500828-27500960,
           27501052-27501171,27502436-27502980
          Length = 379

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 176 VGISLRKNVPC*IVIIYSVIQQFGSS 253
           +GI++   +PC I I+Y+V  Q G+S
Sbjct: 245 IGIAVCCCLPCIIAILYAVSDQEGAS 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,365,595
Number of Sequences: 37544
Number of extensions: 92120
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)