Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c04
         (288 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT030419-1|ABO52839.1|  192|Drosophila melanogaster IP17508p pro...    28   2.2  
AE014134-3361|AAN11103.1| 1237|Drosophila melanogaster CG14396-P...    26   9.0  
AE014134-3360|AAN11102.1| 1235|Drosophila melanogaster CG14396-P...    26   9.0  
AE014134-3359|AAN11101.1| 1235|Drosophila melanogaster CG14396-P...    26   9.0  
AE014134-3358|AAF53978.2| 1235|Drosophila melanogaster CG14396-P...    26   9.0  
AE014134-3357|AAF53977.3| 1235|Drosophila melanogaster CG14396-P...    26   9.0  

>BT030419-1|ABO52839.1|  192|Drosophila melanogaster IP17508p
           protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 53  SFIFVIITLNTTIVLCMCLLKVFVQYYI 136
           + I+V + L T  +   CLLKV+  YY+
Sbjct: 151 AIIYVFVNLVTLGIDLFCLLKVYTYYYV 178


>AE014134-3361|AAN11103.1| 1237|Drosophila melanogaster CG14396-PD,
           isoform D protein.
          Length = 1237

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = -2

Query: 281 NVYHPTTSVMTNQTVVSLNK*SLFNKEHFFVMKFQLMIAXNDFFYTFX*YNIAQKPLI 108
           +VY PTTSV  N  +   ++ S+F+K    + +FQ++   ++   +   Y++ Q PL+
Sbjct: 27  DVYFPTTSVKFNMPINEESE-SIFSK--IPLAQFQVLRMEDNRLASDYLYSLEQNPLL 81


>AE014134-3360|AAN11102.1| 1235|Drosophila melanogaster CG14396-PE,
           isoform E protein.
          Length = 1235

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = -2

Query: 281 NVYHPTTSVMTNQTVVSLNK*SLFNKEHFFVMKFQLMIAXNDFFYTFX*YNIAQKPLI 108
           +VY PTTSV  N  +   ++ S+F+K    + +FQ++   ++   +   Y++ Q PL+
Sbjct: 25  DVYFPTTSVKFNMPINEESE-SIFSK--IPLAQFQVLRMEDNRLASDYLYSLEQNPLL 79


>AE014134-3359|AAN11101.1| 1235|Drosophila melanogaster CG14396-PC,
           isoform C protein.
          Length = 1235

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = -2

Query: 281 NVYHPTTSVMTNQTVVSLNK*SLFNKEHFFVMKFQLMIAXNDFFYTFX*YNIAQKPLI 108
           +VY PTTSV  N  +   ++ S+F+K    + +FQ++   ++   +   Y++ Q PL+
Sbjct: 25  DVYFPTTSVKFNMPINEESE-SIFSK--IPLAQFQVLRMEDNRLASDYLYSLEQNPLL 79


>AE014134-3358|AAF53978.2| 1235|Drosophila melanogaster CG14396-PB,
           isoform B protein.
          Length = 1235

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = -2

Query: 281 NVYHPTTSVMTNQTVVSLNK*SLFNKEHFFVMKFQLMIAXNDFFYTFX*YNIAQKPLI 108
           +VY PTTSV  N  +   ++ S+F+K    + +FQ++   ++   +   Y++ Q PL+
Sbjct: 25  DVYFPTTSVKFNMPINEESE-SIFSK--IPLAQFQVLRMEDNRLASDYLYSLEQNPLL 79


>AE014134-3357|AAF53977.3| 1235|Drosophila melanogaster CG14396-PA,
           isoform A protein.
          Length = 1235

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = -2

Query: 281 NVYHPTTSVMTNQTVVSLNK*SLFNKEHFFVMKFQLMIAXNDFFYTFX*YNIAQKPLI 108
           +VY PTTSV  N  +   ++ S+F+K    + +FQ++   ++   +   Y++ Q PL+
Sbjct: 25  DVYFPTTSVKFNMPINEESE-SIFSK--IPLAQFQVLRMEDNRLASDYLYSLEQNPLL 79


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,448
Number of Sequences: 53049
Number of extensions: 185750
Number of successful extensions: 258
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 486883320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)