Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c04
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    27   1.6  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    27   2.2  
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical pr...    25   8.7  
M23064-1|AAA27892.1|  609|Caenorhabditis elegans Na+/H+ antiport...    25   8.7  

>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 82  YNHCSVHVFIKGFC 123
           YNH S H FIK FC
Sbjct: 160 YNHVSHHCFIKSFC 173


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +2

Query: 56  FIFVIITLNTTIVLCMCLLKVFVQYYI 136
           +IFV++ L+  I++ +C++ +   Y+I
Sbjct: 360 YIFVVVRLSAAILIALCIIIIQSTYFI 386


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 154  KSFXAIISWNFITKKCSLLNSDYLFSD 234
            + F  +  WN +   C+L NSD ++ D
Sbjct: 1226 RGFNGVDDWNNLKTACNLTNSDTIYYD 1252


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 2   IYVGARTIRKVLSVCDISFIFVIITLNTTIV 94
           IY+  +TI+K L+   +S   V+ +L+TT++
Sbjct: 295 IYLMRKTIQKSLTAISVSLGTVLFSLSTTVI 325


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 154  KSFXAIISWNFITKKCSLLNSDYLFSD 234
            + F  +  WN +   C+L NSD ++ D
Sbjct: 1226 RGFNGVDDWNNLKTACNLTNSDTIYYD 1252


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
            protein Y16B4A.2 protein.
          Length = 2105

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 154  KSFXAIISWNFITKKCSLLNSDYLFSD 234
            + F  +  WN +   C+L NSD ++ D
Sbjct: 1226 RGFNGVDDWNNLKTACNLTNSDTIYYD 1252


>Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical
           protein W01D2.5 protein.
          Length = 348

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 68  IITLNTTIVLCMCLLKVFVQY-YIX*TCKKNHL 163
           I + +TTIVLC+ L+  F  Y Y+    ++N L
Sbjct: 53  IASFSTTIVLCLSLIHWFYVYKYVSIEKRRNKL 85


>M23064-1|AAA27892.1|  609|Caenorhabditis elegans Na+/H+ antiporter
           protein.
          Length = 609

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 131 NIAQKPLINTCTEQWLYLTLLSQ 63
           +I +KP+  T T  W+Y T+  Q
Sbjct: 355 SITRKPMFITATIAWIYFTVFLQ 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,309,097
Number of Sequences: 27780
Number of extensions: 109257
Number of successful extensions: 272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)