Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c04
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   0.75 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   0.75 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   0.75 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   5.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   7.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    20   7.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 73  YYHKYKRNI 47
           YYHKYK N+
Sbjct: 427 YYHKYKENL 435


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 73  YYHKYKRNI 47
           YYHKYK N+
Sbjct: 427 YYHKYKENL 435


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 73 YYHKYKRNI 47
          YYHKYK N+
Sbjct: 53 YYHKYKENL 61


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 80  NTTIVLCMCLLK 115
           N+TI +C+C+ K
Sbjct: 98  NSTIAVCVCMRK 109


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 178 WNFITKKCSLLNSDYLFSDTTVW 246
           WN  T +  L    +LFS  TV+
Sbjct: 39  WNLATDRAGLAILLFLFSVATVF 61


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
          protein.
          Length = 169

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 90 MVVFNVIITNINEISHTDNTFLI 22
          +VV   +I  +N ++HT N F +
Sbjct: 24 LVVGPYVIGLMNTMTHTTNAFCL 46


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
          protein.
          Length = 168

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 90 MVVFNVIITNINEISHTDNTFLI 22
          +VV   +I  +N ++HT N F +
Sbjct: 23 LVVGPYVIGLMNTMTHTTNAFCL 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,922
Number of Sequences: 438
Number of extensions: 1400
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)