Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c03
         (658 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018698-1|AAH18698.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...    34   0.51 
BC018665-1|AAH18665.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...    34   0.51 
BC008719-1|AAH08719.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...    34   0.51 
AJ131186-1|CAB51857.1|  504|Homo sapiens nuclear matrix protein ...    34   0.51 
BC103846-1|AAI03847.1|  127|Homo sapiens keratin associated prot...    30   8.3  
BC103845-1|AAI03846.1|  127|Homo sapiens keratin associated prot...    30   8.3  
AK128756-1|BAC87601.1|  181|Homo sapiens protein ( Homo sapiens ...    30   8.3  
AJ406942-1|CAC27581.1|  127|Homo sapiens keratin associated prot...    30   8.3  

>BC018698-1|AAH18698.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score = 33.9 bits (74), Expect = 0.51
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 291 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 458
           H   DY L  +SSDD Y+    +    +  K+T    GC S++C  FH  G++  T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367


>BC018665-1|AAH18665.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score = 33.9 bits (74), Expect = 0.51
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 291 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 458
           H   DY L  +SSDD Y+    +    +  K+T    GC S++C  FH  G++  T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367


>BC008719-1|AAH08719.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score = 33.9 bits (74), Expect = 0.51
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 291 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 458
           H   DY L  +SSDD Y+    +    +  K+T    GC S++C  FH  G++  T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367


>AJ131186-1|CAB51857.1|  504|Homo sapiens nuclear matrix protein
           NMP200 protein.
          Length = 504

 Score = 33.9 bits (74), Expect = 0.51
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 291 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 458
           H   DY L  +SSDD Y+    +    +  K+T    GC S++C  FH  G++  T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367


>BC103846-1|AAI03847.1|  127|Homo sapiens keratin associated protein
           4-10 protein.
          Length = 127

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -2

Query: 483 RSACT*TVSCWTRLRFRETDSSSCFRTRAC*KSV*RPALCRPISAAHNNRRHLTRDATCS 304
           R +C  T  C            SC +T  C  +  RP+ CRP+       R     ++C 
Sbjct: 26  RPSCCQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPV-CCQTTCRPSCGVSSCC 84

Query: 303 RSVYAET*C 277
           R +  +T C
Sbjct: 85  RPLCCQTTC 93


>BC103845-1|AAI03846.1|  127|Homo sapiens keratin associated protein
           4-10 protein.
          Length = 127

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -2

Query: 483 RSACT*TVSCWTRLRFRETDSSSCFRTRAC*KSV*RPALCRPISAAHNNRRHLTRDATCS 304
           R +C  T  C            SC +T  C  +  RP+ CRP+       R     ++C 
Sbjct: 26  RPSCCQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPV-CCQTTCRPSCGVSSCC 84

Query: 303 RSVYAET*C 277
           R +  +T C
Sbjct: 85  RPLCCQTTC 93


>AK128756-1|BAC87601.1|  181|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44869 fis, clone BRAMY2015516. ).
          Length = 181

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 CPTRHRSCTRRPQRLEWVTRSQRATIWTGRRPCVKAPKIKFSLPSLDTRPTTDASW-WT 621
           CP+    C      L W   +  A  W    PC+  P + F+LP  D RPT    W WT
Sbjct: 16  CPSMPWPCPHPALALHWSCPAL-ALPWPW--PCL-LPGLAFALPWPDPRPTESMKWPWT 70


>AJ406942-1|CAC27581.1|  127|Homo sapiens keratin associated protein
           4.10 protein.
          Length = 127

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -2

Query: 483 RSACT*TVSCWTRLRFRETDSSSCFRTRAC*KSV*RPALCRPISAAHNNRRHLTRDATCS 304
           R +C  T  C            SC +T  C  +  RP+ CRP+       R     ++C 
Sbjct: 26  RPSCCQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPV-CCQTTCRPSCGVSSCC 84

Query: 303 RSVYAET*C 277
           R +  +T C
Sbjct: 85  RPLCCQTTC 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,082,495
Number of Sequences: 237096
Number of extensions: 1760387
Number of successful extensions: 3207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3188
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)