Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c03
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF045642-3|AAC02581.1|  588|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical
           protein F23H11.4b protein.
          Length = 598

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 439 PESCPTRHRSCTRRPQRLEWVTRSQRATIWTGRRPCVKAPKIKFSLPSLDTRPTTDA--S 612
           P + PT    C    +  EW+T  +     +  RP      I   +P  D+RP+ D+  +
Sbjct: 167 PSNAPTTSPDCD---ELREWLTEEEENESCSSSRPENLNASIPAPIPGDDSRPSIDSEEN 223

Query: 613 WWTRCPK 633
            +T CP+
Sbjct: 224 PYTPCPR 230


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 439 PESCPTRHRSCTRRPQRLEWVTRSQRATIWTGRRPCVKAPKIKFSLPSLDTRPTTDA--S 612
           P + PT    C    +  EW+T  +     +  RP      I   +P  D+RP+ D+  +
Sbjct: 167 PSNAPTTSPDCD---ELREWLTEEEENESCSSSRPENLNASIPAPIPGDDSRPSIDSEEN 223

Query: 613 WWTRCPK 633
            +T CP+
Sbjct: 224 PYTPCPR 230


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 565 KFSLPSLDTRPTTDASWWTRCPK 633
           +F+   L+T PT   SWW R PK
Sbjct: 622 RFTSVCLETLPTLKGSWWFRKPK 644


>AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical
           protein Y94A7B.7 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 180 VIYNMAVLTAVDLTNASRYAIHMHRLEFISR--WR-TRFPHILIDYTLRPASSDDDYYVP 350
           VIY +A+   V +T  S +  + + + F+ +  WR  R+P +L +YTL  A     Y   
Sbjct: 96  VIYVLAIFKIVPMTIISMFE-NRYFVLFVKKGPWRYLRYPFLLFNYTLALALCIPVYLEA 154

Query: 351 PKLADRALAVKLTFSKRGCE 410
           P   + A  V      + C+
Sbjct: 155 PIDQENARRVLFETHSQACK 174


>AF045642-3|AAC02581.1|  588|Caenorhabditis elegans Hypothetical
           protein C17H12.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 312 LRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSET 491
           L P+    D+  P KL +      LTF KRGC ++       TG +  +  F+ + T+ +
Sbjct: 352 LFPSRLWQDWDTPTKLFELVNTWMLTFQKRGCNNLL-----STGAIGASQAFVQSLTASS 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,601
Number of Sequences: 27780
Number of extensions: 273670
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)