Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18c02
         (523 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SG08 Cluster: Chromosome 7 SCAF14601, whole genome sh...    46   4e-04
UniRef50_Q8NFP9 Cluster: Protein neurobeachin; n=31; Euteleostom...    46   5e-04
UniRef50_UPI0000F1FDAE Cluster: PREDICTED: similar to neurobeach...    44   0.002
UniRef50_P50851 Cluster: Lipopolysaccharide-responsive and beige...    42   0.006
UniRef50_A7TL53 Cluster: Putative uncharacterized protein; n=1; ...    35   0.98 
UniRef50_Q16IP7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.3  
UniRef50_A0BU83 Cluster: Chromosome undetermined scaffold_129, w...    32   9.2  

>UniRef50_Q4SG08 Cluster: Chromosome 7 SCAF14601, whole genome
           shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 7
           SCAF14601, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 3036

 Score = 46.4 bits (105), Expect = 4e-04
 Identities = 19/31 (61%), Positives = 28/31 (90%)
 Frame = +2

Query: 185 NDSLKFAVLIGLIEVGQVTNREVVNTVLHLI 277
           N  +KFAVL+GLI+VG+V+NR++V TVL+L+
Sbjct: 24  NIQMKFAVLVGLIQVGEVSNRDIVETVLNLV 54


>UniRef50_Q8NFP9 Cluster: Protein neurobeachin; n=31;
           Euteleostomi|Rep: Protein neurobeachin - Homo sapiens
           (Human)
          Length = 2946

 Score = 46.0 bits (104), Expect = 5e-04
 Identities = 20/31 (64%), Positives = 28/31 (90%)
 Frame = +2

Query: 185 NDSLKFAVLIGLIEVGQVTNREVVNTVLHLI 277
           N  +KFAVLIGLI+VG+V+NR++V TVL+L+
Sbjct: 69  NIRMKFAVLIGLIQVGEVSNRDIVETVLNLL 99


>UniRef50_UPI0000F1FDAE Cluster: PREDICTED: similar to
           neurobeachin,; n=1; Danio rerio|Rep: PREDICTED: similar
           to neurobeachin, - Danio rerio
          Length = 103

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +2

Query: 185 NDSLKFAVLIGLIEVGQVTNREVVNTVLHL 274
           N   KFAVLIGLI+VG+V+NR++V TVL+L
Sbjct: 61  NIKTKFAVLIGLIQVGEVSNRDIVETVLNL 90


>UniRef50_P50851 Cluster: Lipopolysaccharide-responsive and
           beige-like anchor protein; n=68; Eumetazoa|Rep:
           Lipopolysaccharide-responsive and beige-like anchor
           protein - Homo sapiens (Human)
          Length = 2863

 Score = 42.3 bits (95), Expect = 0.006
 Identities = 17/28 (60%), Positives = 25/28 (89%)
 Frame = +2

Query: 194 LKFAVLIGLIEVGQVTNREVVNTVLHLI 277
           +KFAVL GL+EVG+V+NR++V TV +L+
Sbjct: 46  MKFAVLTGLVEVGEVSNRDIVETVFNLL 73


>UniRef50_A7TL53 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 1506

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
 Frame = +2

Query: 71  VDYNFVHQ*IVTNLIMADLKSPPFSDIKRPEE---VVRMTTNDS-LKFAVLIGLIEVGQV 238
           +DYN VH+ ++ +L   D+K+     + +  E   +  +T NDS +K A+L+ ++ + + 
Sbjct: 609 LDYNDVHELLLNDLETLDIKNKYMKKLSQQIEELSIYLLTDNDSRVKIALLVNILPLCKY 668

Query: 239 TNREVVNTVL--HLI 277
             RE  N ++  HLI
Sbjct: 669 FGREKTNDIILSHLI 683


>UniRef50_Q16IP7 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 144

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +1

Query: 199 ICSSYRFD*SRTGYQQGSGEHRPALDSDHLLIHLIPL*RNPVSRLSKNILIDNKXXXXXX 378
           +C S      R  +   +G H+P  D+   L +      NP S+L KN+ I         
Sbjct: 35  VCKSKLITRFRPPFCPRTGRHKPTTDATFSLFNFTSFETNPDSKLQKNLEIPTAKQNHVK 94

Query: 379 XXENRRTHLEAFII 420
             + RRT L   ++
Sbjct: 95  YSDRRRTILNGVLV 108


>UniRef50_A0BU83 Cluster: Chromosome undetermined scaffold_129,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_129,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2934

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 370 QSTIYYQSKY-SWIILKQDFVIME*DGSGDDRNQVQDGVHHFPVGNLSDFNQTDKNCKFQ 194
           Q TI Y ++  S I +  DF++ E + + D+R  VQ  +   P+  +    Q ++   FQ
Sbjct: 719 QDTINYVNQIQSSIKMISDFLMYEKESNADNRTDVQILIDQKPLAEIQKIFQQNQINNFQ 778

Query: 193 -TIVRRHANHFFWSFYV 146
            ++  +  N +F SF++
Sbjct: 779 LSVCVQKLNSYFDSFFI 795


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,814,425
Number of Sequences: 1657284
Number of extensions: 8946903
Number of successful extensions: 16572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16569
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)