Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18b21
(249 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 87 2e-19
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 28 0.21
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.36
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 0.63
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 25 1.5
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 24 2.6
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 24 2.6
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 24 2.6
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 23 4.5
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 23 4.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 4.5
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 23 5.9
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 23 7.8
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 23 7.8
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 23 7.8
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 23 7.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 23 7.8
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 23 7.8
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 23 7.8
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 87.4 bits (207), Expect = 2e-19
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = +1
Query: 37 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 189
M +HK+F K+KLAK +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1 MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 27.9 bits (59), Expect = 0.21
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 201 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 109
++S+ L +P TP S +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 0.36
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 171 SPVTPLSVISNSVSCAHPYPLRNGS 97
+P TP++V S++V+ AH Y GS
Sbjct: 982 NPYTPIAVASSTVNPAHTYKPHGGS 1006
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 26.2 bits (55), Expect = 0.63
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 159 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQK 13
P +I +S S HP PL +G VL + + NNK + + SC +
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSCSQ 156
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 248 FFFGLYRVFIRLHLTHSQAYNLS 180
FFFG R + L+ TH++ ++LS
Sbjct: 364 FFFGTDRYSLPLYKTHARRFSLS 386
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 24.2 bits (50), Expect = 2.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 89 FSFLANLRLIINVLWADILNNQVVKKKKK 3
+ F ++ +IIN W D N VV + K
Sbjct: 256 YDFPEDMNMIINCEWCDFDNQHVVLPRTK 284
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.2 bits (50), Expect = 2.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 233 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIV 135
YRVFI LHL A +FVL + L +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 2.6
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +1
Query: 85 LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 180
+K+ +P+P+W ++ G + W R K
Sbjct: 23 VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 23.4 bits (48), Expect = 4.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 186 LELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 55
+++ + TP +I+ + H L S L + +GQ A NNK
Sbjct: 344 VDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 23.4 bits (48), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 49 KTFIIKRKLAKKLKQNRPIPQW 114
+T +K+KL K NRP+P W
Sbjct: 18 RTITVKQKLGK----NRPLPGW 35
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.4 bits (48), Expect = 4.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 41 RPIRRLLLSANWPKS*NKTD 100
RP++ +L N PKS K D
Sbjct: 1791 RPVKNVLFETNVPKSLRKVD 1810
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 23.0 bits (47), Expect = 5.9
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +1
Query: 79 KKLKQNRPIPQWVRMRTGNTIRYNAKRR 162
+K++ +P PQW++++ + + K R
Sbjct: 76 EKMEVPKPTPQWMKLKDEGKLGKHRKNR 103
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 22.6 bits (46), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 83 FLANLRLIINVLWADILNNQVVKKKKK 3
FL NL L + + ILNN + KKK+
Sbjct: 339 FLENLSLKNSSVLKKILNNLALMKKKE 365
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 22.6 bits (46), Expect = 7.8
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -1
Query: 177 CPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFG-QFALNNKRLMGRHFEQSSCQKKKK 4
CP S +S H + G++ F K ++ RH E+ +C+K K
Sbjct: 238 CPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHK 296
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 246 FFWTLQGFY*ITFNTFTSLQLELCPSPVTPLSVISN 139
+ W L F+ + F+TF CP+ T SV+++
Sbjct: 1338 YAWLLYMFFQMYFSTFGQAVASACPNAQT-ASVVNS 1372
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 22.6 bits (46), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 93 LFQLFGQFALNNKRLMGRHFEQSSCQKKKK 4
+F F + LN K + HF SSCQ + K
Sbjct: 32 IFARFKFYPLN-KIVNYNHFHSSSCQSEAK 60
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 22.6 bits (46), Expect = 7.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -1
Query: 156 LSVISNSVSCAHPYPL 109
L++++ S C HP+PL
Sbjct: 493 LALVTTSQVCRHPHPL 508
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 22.6 bits (46), Expect = 7.8
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -2
Query: 215 LHLTHSQAYNLSFVLLQ*RLLALYRIVFPV 126
LH+ H + Y +S +L + + Y+++ P+
Sbjct: 73 LHIGHVRVYTISDILSRYYRMKGYKVIHPM 102
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 22.6 bits (46), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 224 FIRLHLTHSQAYNLSFVL 171
FI+L T A+NL FVL
Sbjct: 160 FIKLFYTFQDAHNLYFVL 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,010,078
Number of Sequences: 5004
Number of extensions: 17503
Number of successful extensions: 63
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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