Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18b21
(249 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal prote... 94 1e-20
AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal pro... 94 1e-20
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 28 1.0
AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinas... 28 1.0
AC024765-8|AAF60530.1| 165|Caenorhabditis elegans Hypothetical ... 27 1.8
Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical pr... 27 2.3
U61952-10|AAQ01532.2| 217|Caenorhabditis elegans Hypothetical p... 27 2.3
U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine rece... 26 4.1
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 25 5.4
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 25 5.4
Z81113-7|CAI79236.1| 351|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z71178-13|CAF31498.1| 342|Caenorhabditis elegans Hypothetical p... 25 7.1
Z71178-11|CAA94885.2| 309|Caenorhabditis elegans Hypothetical p... 25 7.1
AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine re... 25 7.1
Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 25 9.4
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 25 9.4
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 25 9.4
>U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 39 protein.
Length = 51
Score = 94.3 bits (224), Expect = 1e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = +1
Query: 37 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 189
MSA K IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal
protein L39 protein.
Length = 51
Score = 94.3 bits (224), Expect = 1e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = +1
Query: 37 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 189
MSA K IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -1
Query: 171 SPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQKKKKK 1
S PLSVIS+S S P+ + +++ ++ + + +G + E SC K+
Sbjct: 19 SQYEPLSVISSSWSMWSPWSFCSNNLMIRVRACSTVRGYKCLGHNKEFQSCNSPPKR 75
>AF039037-4|AAC48229.3| 311|Caenorhabditis elegans Protein kinase
protein 34 protein.
Length = 311
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -1
Query: 186 LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFALNNKR 52
L++ P P++PLSV++N PY PL GS FGQ AL + R
Sbjct: 4 LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNR 45
>AC024765-8|AAF60530.1| 165|Caenorhabditis elegans Hypothetical
protein Y39A3CR.8 protein.
Length = 165
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 64 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 183
K+K+ K +++ +P + TGNT N ++RH R+ ++
Sbjct: 68 KKKVVKSVEKTARMPD--KPETGNTATGNPEKRHKRKKRV 105
>Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical
protein Y41E3.14 protein.
Length = 329
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 216 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHP 118
I F T T + +C S ++ + I SV C++P
Sbjct: 72 IVFLTLTDMSATVCSSIISGVLYIKGSVFCSYP 104
>Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical
protein F58A4.7c protein.
Length = 428
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 204 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 88
T SL+ + P+P+ P+SV +S S + P PL ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342
>Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical
protein F58A4.7b protein.
Length = 431
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 204 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 88
T SL+ + P+P+ P+SV +S S + P PL ++F
Sbjct: 305 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 344
>Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical
protein F58A4.7a protein.
Length = 429
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 204 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 88
T SL+ + P+P+ P+SV +S S + P PL ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342
>U61952-10|AAQ01532.2| 217|Caenorhabditis elegans Hypothetical
protein F42A9.9 protein.
Length = 217
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 125 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 214
A +FD+T+ G +GQ +C L+ V+ +
Sbjct: 23 ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52
>U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine
receptor, class t protein25 protein.
Length = 288
Score = 25.8 bits (54), Expect = 4.1
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -2
Query: 242 FGLYRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIVF---PVRI--LTH*GMGLFCFSFL 78
+G++ VF+ + LS + LLA VF PV I L G+GL+C S
Sbjct: 24 YGIFMVFLMFVVGIVDMLALSMNSISTGLLAYQGAVFCTYPVFIYFLGLAGLGLWCCSCF 83
Query: 77 ANLRLIIN 54
N+ L++N
Sbjct: 84 MNILLLVN 91
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 49 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 189
+ FI++++L KKL++ + R R +RY K+ R+ L +
Sbjct: 718 RRFIMRKRLKKKLRKRYRGAKRRRKRQKYRLRYRKKKYQLRKGALNM 764
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 52 TFIIKRKLAKKLKQ--NRPIPQWVRMRTGNTIRYNAKRRHWRR 174
T +I+R KLK+ +R I Q + N + KRR W+R
Sbjct: 400 TILIERGKMPKLKKIRDRYIKQKKKFNKENRLSKECKRRKWQR 442
>Z81113-7|CAI79236.1| 351|Caenorhabditis elegans Hypothetical
protein T03F6.7 protein.
Length = 351
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +1
Query: 88 KQNRP---IPQWVRMRTGNTIRYNAKRRHWRR 174
K NRP IP W+ + +G I + HW +
Sbjct: 149 KYNRPVSAIPHWLDVISGENIYFMLMSDHWEK 180
>Z71178-13|CAF31498.1| 342|Caenorhabditis elegans Hypothetical
protein B0024.13b protein.
Length = 342
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 248 FFFGLYRVFIRLHLTHSQAYNLSFV 174
+ GL +FI LH HS YN +++
Sbjct: 73 YAIGLLTLFICLHTVHSLIYNPNYL 97
>Z71178-11|CAA94885.2| 309|Caenorhabditis elegans Hypothetical
protein B0024.13a protein.
Length = 309
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 248 FFFGLYRVFIRLHLTHSQAYNLSFV 174
+ GL +FI LH HS YN +++
Sbjct: 73 YAIGLLTLFICLHTVHSLIYNPNYL 97
>AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine
receptor, class t protein26 protein.
Length = 297
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 107 GMGLFCFSFLANLRLIIN 54
G+GL+C S L N+ L++N
Sbjct: 95 GLGLWCCSCLLNILLLVN 112
>Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.6 protein.
Length = 316
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 143 RIVFPVRILTH*GMGLFCFSFLANLRL 63
+++FP +++ +G+FCFSF + +
Sbjct: 127 KLIFPDKVIYVIIIGVFCFSFFFTVNI 153
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 239 GLYRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFL 78
G Y +F+ LH + FV L + IVF V +L +FC ++L
Sbjct: 169 GYYNMFLSLHARRFHYFIAKFVFWYGIALIISLIVFIVNVLV--VPAVFCSTYL 220
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 239 GLYRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFL 78
G Y +F+ LH + FV L + IVF V +L +FC ++L
Sbjct: 169 GYYNMFLSLHARRFHYFIAKFVFWYGIALIISLIVFIVNVLV--VPAVFCSTYL 220
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 239 GLYRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFL 78
G Y +F+ LH + FV L + IVF V +L +FC ++L
Sbjct: 169 GYYNMFLSLHARRFHYFIAKFVFWYGIALIISLIVFIVNVLV--VPAVFCSTYL 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,613,119
Number of Sequences: 27780
Number of extensions: 100066
Number of successful extensions: 263
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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