Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18b19
(726 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC094751-1|AAH94751.1| 894|Homo sapiens exocyst complex compone... 31 3.2
AK027413-1|BAB55095.1| 879|Homo sapiens protein ( Homo sapiens ... 31 3.2
AK001755-1|BAA91886.1| 894|Homo sapiens protein ( Homo sapiens ... 31 3.2
L37378-1|AAA74451.1| 1108|Homo sapiens guanylyl cyclase protein. 30 7.3
AL031387-4|CAB41303.1| 1108|Homo sapiens guanylate cyclase 2F, r... 30 7.3
AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy cha... 30 7.3
AC102952-1|AAS07505.1| 453|Homo sapiens Homo sapiens dynein, ax... 30 7.3
>BC094751-1|AAH94751.1| 894|Homo sapiens exocyst complex component
1 protein.
Length = 894
Score = 31.5 bits (68), Expect = 3.2
Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +2
Query: 338 KRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKIFIEAFEYSYTN 517
K+++ +N + ++ N+ + D V DE+ L +E +I +E EY+ +N
Sbjct: 125 KKIDFVNVSSQLLEESVPSGENQSVTGGDEEVVDEYQELNAREEQDIEIMMEGCEYAISN 184
Query: 518 TNAISMDKTDEFDFIKQPTLKS-LPDARPPSLLTSVMNERKRKLQNTNSK 664
A + + E + ++S + + ++L +++E +++ K
Sbjct: 185 AEAFAEKLSRELQVLDGANIQSIMASEKQVNILMKLLDEALKEVDQIELK 234
>AK027413-1|BAB55095.1| 879|Homo sapiens protein ( Homo sapiens
cDNA FLJ14507 fis, clone NT2RM1000399. ).
Length = 879
Score = 31.5 bits (68), Expect = 3.2
Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +2
Query: 338 KRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKIFIEAFEYSYTN 517
K+++ +N + ++ N+ + D V DE+ L +E +I +E EY+ +N
Sbjct: 125 KKIDFVNVSSQLLEESVPSGENQSVTGGDEEVVDEYQELNAREEQDIEIMMEGCEYAISN 184
Query: 518 TNAISMDKTDEFDFIKQPTLKS-LPDARPPSLLTSVMNERKRKLQNTNSK 664
A + + E + ++S + + ++L +++E +++ K
Sbjct: 185 AEAFAEKLSRELQVLDGANIQSIMASEKQVNILMKLLDEALKEVDQIELK 234
>AK001755-1|BAA91886.1| 894|Homo sapiens protein ( Homo sapiens
cDNA FLJ10893 fis, clone NT2RP4002791. ).
Length = 894
Score = 31.5 bits (68), Expect = 3.2
Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +2
Query: 338 KRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKIFIEAFEYSYTN 517
K+++ +N + ++ N+ + D V DE+ L +E +I +E EY+ +N
Sbjct: 125 KKIDFVNVSSQLLEESVPSGENQSVTGGDEEVVDEYQELNAREEQDIEIMMEGCEYAISN 184
Query: 518 TNAISMDKTDEFDFIKQPTLKS-LPDARPPSLLTSVMNERKRKLQNTNSK 664
A + + E + ++S + + ++L +++E +++ K
Sbjct: 185 AEAFAEKLSRELQVLDGANIQSIMASEKQVNILMKLLDEALKEVDQIELK 234
>L37378-1|AAA74451.1| 1108|Homo sapiens guanylyl cyclase protein.
Length = 1108
Score = 30.3 bits (65), Expect = 7.3
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = +2
Query: 374 SPRAMLQHYNECLENL--DNPVTDE--HHLLTFGKEVATKIF---IEAFEYSYTNTNAIS 532
+P LQ +C P DE + TF K T I + E +N +
Sbjct: 780 APPECLQLMKQCWAEAAEQRPTFDEIFNQFKTFNKGKKTNIIDSMLRMLEQYSSNLEDLI 839
Query: 533 MDKTDEFDFIKQPTLKSLPDARPPSLLTSV 622
++T+E + KQ T K L PPS+ S+
Sbjct: 840 RERTEELEIEKQKTEKLLTQMLPPSVAESL 869
>AL031387-4|CAB41303.1| 1108|Homo sapiens guanylate cyclase 2F,
retinal protein.
Length = 1108
Score = 30.3 bits (65), Expect = 7.3
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = +2
Query: 374 SPRAMLQHYNECLENL--DNPVTDE--HHLLTFGKEVATKIF---IEAFEYSYTNTNAIS 532
+P LQ +C P DE + TF K T I + E +N +
Sbjct: 780 APPECLQLMKQCWAEAAEQRPTFDEIFNQFKTFNKGKKTNIIDSMLRMLEQYSSNLEDLI 839
Query: 533 MDKTDEFDFIKQPTLKSLPDARPPSLLTSV 622
++T+E + KQ T K L PPS+ S+
Sbjct: 840 RERTEELEIEKQKTEKLLTQMLPPSVAESL 869
>AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy chain
dynein type 11 protein.
Length = 4523
Score = 30.3 bits (65), Expect = 7.3
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +2
Query: 233 YKDFNRRILLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECL 412
Y ++L + K K +SYFP+ K+I +A++ D++ R + +H +CL
Sbjct: 292 YDQLQAPVVLKMVKILTTKQSSYFPTLKDIF-LAVENALLEAQDVELYLRPLRRHI-QCL 349
Query: 413 ENLDNPVT 436
+ + P T
Sbjct: 350 QETEFPQT 357
>AC102952-1|AAS07505.1| 453|Homo sapiens Homo sapiens dynein,
axonemal, heavy polypeptide 11 (DNAH11) protein.
Length = 453
Score = 30.3 bits (65), Expect = 7.3
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +2
Query: 233 YKDFNRRILLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECL 412
Y ++L + K K +SYFP+ K+I +A++ D++ R + +H +CL
Sbjct: 175 YDQLQAPVVLKMVKILTTKQSSYFPTLKDIF-LAVENALLEAQDVELYLRPLRRHI-QCL 232
Query: 413 ENLDNPVT 436
+ + P T
Sbjct: 233 QETEFPQT 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,975,218
Number of Sequences: 237096
Number of extensions: 1689734
Number of successful extensions: 3567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3562
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -