Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18b10
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   1.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   4.1  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    24   7.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   9.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.4  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    24   9.4  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 87  ENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFKKKMDFIKI 260
           EN + +  YLA ++   T+ +++V+    K NP   SF +  +  N    +   FIK+
Sbjct: 178 ENTKRIIQYLAAIASSTTVGSSQVEEQIIKTNPVLESFGNARTVRNNNSSRFGKFIKV 235


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 48  IIFRERLHHSPAQENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNV 227
           I+ R+ LH+ P  EN   V   LAK S  +   N    +       +    + +P+ +  
Sbjct: 49  IVARDALHNRPVFENHGPVQVMLAKPSSNYEPGNITAAVSPPASTSSKDGVVCSPTSTGA 108

Query: 228 T--FKKKMDFIKI 260
           +   K ++D +++
Sbjct: 109 SQLLKSRVDILEV 121


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 54  FRERLHHSPAQENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPN 188
           + + + H   + N   + P  +K     TIL  +++    KKN N
Sbjct: 454 YLDSMTHLERKVNAPFIMPIASKYKDLGTILEGKIEAGSIKKNSN 498


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 188 IWIFFAFIYLHSCV 147
           +WI+F F Y+ +C+
Sbjct: 289 LWIYFTFKYITTCI 302


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 171 SKKNPNPASFIDTPSKSNVTFKK 239
           +   PN + F D PS SNV+  +
Sbjct: 503 ASNQPNYSPFADNPSSSNVSIPR 525


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 268 SKNIFIKSIFFLNVTLDFEG---VSINEAGFGFFLLLSICTLAFKIVQKPETLA 116
           +KNI +K+    + T+  +    VS ++   G FLL   C L  K  + P+  A
Sbjct: 26  NKNIPLKNWLRTSTTISKQAHVYVSEHDYSNGVFLLFRYCELFMKCQKHPDAAA 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,152
Number of Sequences: 5004
Number of extensions: 23697
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)